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The map label for this gene is dppB [H]

Identifier: 218901386

GI number: 218901386

Start: 185832

End: 186755

Strand: Direct

Name: dppB [H]

Synonym: BCAH820_0205

Alternate gene names: 218901386

Gene position: 185832-186755 (Clockwise)

Preceding gene: 218901384

Following gene: 218901387

Centisome position: 3.5

GC content: 35.5

Gene sequence:

>924_bases
ATGGAAGTGTATGTAATTAAAAAATTATCGGTTATGGTGTTCACACTATGGGTTATTACGACAGTGACATTTCTAATTAT
GCATATTATTCCGGGAGATCCATTTTCATCAGATGCAAAAATCTTTCCTGAAGAAGTGATCCAAAACATGAGGGCGAAGT
ATCACCTTGATGAACCGTTATGGAATCAATATGTTGCTTATTTAGACGGTGTAGTTCATTTTGATTTTGGTGAATCCGTT
CAGTCGACGGGGCAAGGTGTATCAGAGATTATAACGACCGGATTTGGTCCATCAGCGATTATTGGTTTACAAGCACTTAT
TATTTCATTATTAGTCGGAATTGCTGCAGGTACATTTGCTGCTCTATATCATGGGAAAGTAATTGACTATAGTGTGAGCT
TACTTGCGATTCTCGGTATTTCTATTCCAAGTTTTATTTTAGCACCATTATTTATACAAGTATTCGCTATACAGTTTGAA
CTTTTACCAGTAGCGTCTTGGGGCACCTTCGAACATACGGTATTGCCATCCTTTGCATTAGCACTAGGACCAATCGCGGT
TATTACAAGATTTGTTCGTTCTAATATGATCGAAGTTTTGCAGAGTGATTATATTAAGCTAGCGAGAGCGAAAGGTATAC
CAATTAAGAAAATCATTATAAGACACGCTCTTCGAAATGCAATTGTTCCAGTACTTACATTTGTTGGACCGTTAATGGCT
GGACTTTTAACAGGTACTTTCGTTATTGAAAAGATTTTTTCAATTCCTGGTCTCGGGAAATATTTTGTAGATAGTATTTT
TAATCGAGATTATCCAGTGATTATGGGAACAACCATTTTTTATAGTGCACTTTTAATCTTATGTATTTTTATTACAGATA
TTATTCACCGTATTGTTGATCCACGTATTCGTTCTATTACGTAA

Upstream 100 bases:

>100_bases
ATTTTTTAGGATCAAGGCTTTTTGTATTCTAAAAAGAGAAAAGGGAGTAATGGAAAAAGTACGTTCATAAAACAAAGTAA
ATTCATGTGTTTAGGGGGTT

Downstream 100 bases:

>100_bases
GGAGGGGGATGTTTAGATGGGGGCTTATGAAATTAATAATCAGTTATTAACGAATGAAGAGAAAAAAGAATTAACGATAA
ATAAAGATCAGCAAAAGATT

Product: oligopeptide ABC transporter, permease protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MEVYVIKKLSVMVFTLWVITTVTFLIMHIIPGDPFSSDAKIFPEEVIQNMRAKYHLDEPLWNQYVAYLDGVVHFDFGESV
QSTGQGVSEIITTGFGPSAIIGLQALIISLLVGIAAGTFAALYHGKVIDYSVSLLAILGISIPSFILAPLFIQVFAIQFE
LLPVASWGTFEHTVLPSFALALGPIAVITRFVRSNMIEVLQSDYIKLARAKGIPIKKIIIRHALRNAIVPVLTFVGPLMA
GLLTGTFVIEKIFSIPGLGKYFVDSIFNRDYPVIMGTTIFYSALLILCIFITDIIHRIVDPRIRSIT

Sequences:

>Translated_307_residues
MEVYVIKKLSVMVFTLWVITTVTFLIMHIIPGDPFSSDAKIFPEEVIQNMRAKYHLDEPLWNQYVAYLDGVVHFDFGESV
QSTGQGVSEIITTGFGPSAIIGLQALIISLLVGIAAGTFAALYHGKVIDYSVSLLAILGISIPSFILAPLFIQVFAIQFE
LLPVASWGTFEHTVLPSFALALGPIAVITRFVRSNMIEVLQSDYIKLARAKGIPIKKIIIRHALRNAIVPVLTFVGPLMA
GLLTGTFVIEKIFSIPGLGKYFVDSIFNRDYPVIMGTTIFYSALLILCIFITDIIHRIVDPRIRSIT
>Mature_307_residues
MEVYVIKKLSVMVFTLWVITTVTFLIMHIIPGDPFSSDAKIFPEEVIQNMRAKYHLDEPLWNQYVAYLDGVVHFDFGESV
QSTGQGVSEIITTGFGPSAIIGLQALIISLLVGIAAGTFAALYHGKVIDYSVSLLAILGISIPSFILAPLFIQVFAIQFE
LLPVASWGTFEHTVLPSFALALGPIAVITRFVRSNMIEVLQSDYIKLARAKGIPIKKIIIRHALRNAIVPVLTFVGPLMA
GLLTGTFVIEKIFSIPGLGKYFVDSIFNRDYPVIMGTTIFYSALLILCIFITDIIHRIVDPRIRSIT

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane. Is expressed to facilitate adaptation to nutrient deficiency conditions [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=306, Percent_Identity=40.5228758169935, Blast_Score=259, Evalue=2e-70,
Organism=Escherichia coli, GI1787053, Length=304, Percent_Identity=36.8421052631579, Blast_Score=213, Evalue=1e-56,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=35.207100591716, Blast_Score=204, Evalue=7e-54,
Organism=Escherichia coli, GI1789888, Length=310, Percent_Identity=32.5806451612903, Blast_Score=186, Evalue=1e-48,
Organism=Escherichia coli, GI1787761, Length=317, Percent_Identity=31.2302839116719, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1788504, Length=360, Percent_Identity=28.8888888888889, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=28.9377289377289, Blast_Score=124, Evalue=8e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33919; Mature: 33919

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CHHHCCC
>Mature Secondary Structure
MEVYVIKKLSVMVFTLWVITTVTFLIMHIIPGDPFSSDAKIFPEEVIQNMRAKYHLDEPL
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHH
WNQYVAYLDGVVHFDFGESVQSTGQGVSEIITTGFGPSAIIGLQALIISLLVGIAAGTFA
HHHHHHHHCCHHEECCCHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALYHGKVIDYSVSLLAILGISIPSFILAPLFIQVFAIQFELLPVASWGTFEHTVLPSFAL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHH
ALGPIAVITRFVRSNMIEVLQSDYIKLARAKGIPIKKIIIRHALRNAIVPVLTFVGPLMA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GLLTGTFVIEKIFSIPGLGKYFVDSIFNRDYPVIMGTTIFYSALLILCIFITDIIHRIVD
HHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHC
PRIRSIT
CHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]