Click here to switch to the map view.

The map label for this gene is 218884775

Identifier: 218884775

GI number: 218884775

Start: 1356124

End: 1356969

Strand: Reverse

Name: 218884775

Synonym: DKAM_1464

Alternate gene names: NA

Gene position: 1356969-1356124 (Counterclockwise)

Preceding gene: 218884778

Following gene: 218884774

Centisome position: 99.4

GC content: 44.68

Gene sequence:

>846_bases
ATGTTCTTCAGCGATGCACACCTACATTCGAACCCTGTTAAAGGCCTTGGGGCTGGCAGGATCTCAGCGAAGTTCCGCAA
GGAGGGTGGCTGGTTTATAGCACTCGTAGCTCTTCCCCCACATTACTATGGCATAAAGGAGATCAATATAGAGTCATATA
GAAGAGTACTTGAGATACTAAACAGGGAGGCGAAAGCAGCGGTTGAGAATGGGGTGAAAGTAGTTAGACTTATGGGTTTC
CACCCTGCTGAAGTAGATGAATACTATAAGCAAGGCATTAAAGGTAGACGCCTCTACGAGCTTGCTGAGAAGGTTTTAAA
CCTGATAGAGGATGCCTTAAAGAATGGTCTTCTCGACGGGATTGGTGAAGTCGGTAGGCAACACTATGGGACAAGCGTGG
AGAGAGTTGTTGTCTCCGAGGCAATAATGATTAAGGCACTGGAAATAGCTAGAAACTATGATGCAGTAGTGCATCTACAC
TTAGAGCAAGGCGGGTGGATCACAGCATACTCCATTAGGAAGCTGATGGACTTAACCGGGTTTAAACACGGTAAGATGAT
ACTCCACCACTCAGCAATAGACACAGCTGTATCGGCTGAAGAACTCGGGCTAGGATACACTATACCCATAAAGAGCTTTA
ATAAGGAAGCTATCTCCCTGAAGCTTTCCAATGCCATGATAGAATCGGACTTTATAGATGATCCAGGAAGACCCGGTGTG
GCATCATATCCCTGGGAAATACCTAGAGTCATAAGAAACTACTTGGAGGATAACCTGGTCGATGAAGAGTATGTTTATAG
AGTAATGGTTGATAACATATCGAAATACTATGGTGTTTCACCGTAA

Upstream 100 bases:

>100_bases
AATATTCAATTACTATGTTATCAAAACCAATCATATAAAGCAACTACATTGGGTATTTAAATAATGATAACGCTATTGTA
GGACACACGGGGCGTGCACA

Downstream 100 bases:

>100_bases
GAGGAGACGAATATTTCAAGGGAAACTAGGTGAGGAAGATGAAGTGCGAGATATGCGGTGAGAAGGAGGCATTGTATAAA
TGCAATCTCTGTGGTAGAAG

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MFFSDAHLHSNPVKGLGAGRISAKFRKEGGWFIALVALPPHYYGIKEINIESYRRVLEILNREAKAAVENGVKVVRLMGF
HPAEVDEYYKQGIKGRRLYELAEKVLNLIEDALKNGLLDGIGEVGRQHYGTSVERVVVSEAIMIKALEIARNYDAVVHLH
LEQGGWITAYSIRKLMDLTGFKHGKMILHHSAIDTAVSAEELGLGYTIPIKSFNKEAISLKLSNAMIESDFIDDPGRPGV
ASYPWEIPRVIRNYLEDNLVDEEYVYRVMVDNISKYYGVSP

Sequences:

>Translated_281_residues
MFFSDAHLHSNPVKGLGAGRISAKFRKEGGWFIALVALPPHYYGIKEINIESYRRVLEILNREAKAAVENGVKVVRLMGF
HPAEVDEYYKQGIKGRRLYELAEKVLNLIEDALKNGLLDGIGEVGRQHYGTSVERVVVSEAIMIKALEIARNYDAVVHLH
LEQGGWITAYSIRKLMDLTGFKHGKMILHHSAIDTAVSAEELGLGYTIPIKSFNKEAISLKLSNAMIESDFIDDPGRPGV
ASYPWEIPRVIRNYLEDNLVDEEYVYRVMVDNISKYYGVSP
>Mature_281_residues
MFFSDAHLHSNPVKGLGAGRISAKFRKEGGWFIALVALPPHYYGIKEINIESYRRVLEILNREAKAAVENGVKVVRLMGF
HPAEVDEYYKQGIKGRRLYELAEKVLNLIEDALKNGLLDGIGEVGRQHYGTSVERVVVSEAIMIKALEIARNYDAVVHLH
LEQGGWITAYSIRKLMDLTGFKHGKMILHHSAIDTAVSAEELGLGYTIPIKSFNKEAISLKLSNAMIESDFIDDPGRPGV
ASYPWEIPRVIRNYLEDNLVDEEYVYRVMVDNISKYYGVSP

Specific function: Unknown

COG id: COG1831

COG function: function code R; Predicted metal-dependent hydrolase (urease superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001130
- InterPro:   IPR011589 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: NA

Molecular weight: Translated: 31650; Mature: 31650

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFSDAHLHSNPVKGLGAGRISAKFRKEGGWFIALVALPPHYYGIKEINIESYRRVLEIL
CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCCEEECHHHHHHHHHHH
NREAKAAVENGVKVVRLMGFHPAEVDEYYKQGIKGRRLYELAEKVLNLIEDALKNGLLDG
CHHHHHHHHCCHHEEHEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHH
IGEVGRQHYGTSVERVVVSEAIMIKALEIARNYDAVVHLHLEQGGWITAYSIRKLMDLTG
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEHHHHHHHHHHHHC
FKHGKMILHHSAIDTAVSAEELGLGYTIPIKSFNKEAISLKLSNAMIESDFIDDPGRPGV
CCCCCEEEEHHHHHHHHHHHHHCCCEEEECCCCCCHHEEEEHHHHHHHHCCCCCCCCCCC
ASYPWEIPRVIRNYLEDNLVDEEYVYRVMVDNISKYYGVSP
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MFFSDAHLHSNPVKGLGAGRISAKFRKEGGWFIALVALPPHYYGIKEINIESYRRVLEIL
CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCCEEECHHHHHHHHHHH
NREAKAAVENGVKVVRLMGFHPAEVDEYYKQGIKGRRLYELAEKVLNLIEDALKNGLLDG
CHHHHHHHHCCHHEEHEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHH
IGEVGRQHYGTSVERVVVSEAIMIKALEIARNYDAVVHLHLEQGGWITAYSIRKLMDLTG
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEHHHHHHHHHHHHC
FKHGKMILHHSAIDTAVSAEELGLGYTIPIKSFNKEAISLKLSNAMIESDFIDDPGRPGV
CCCCCEEEEHHHHHHHHHHHHHCCCEEEECCCCCCHHEEEEHHHHHHHHCCCCCCCCCCC
ASYPWEIPRVIRNYLEDNLVDEEYVYRVMVDNISKYYGVSP
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]