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The map label for this gene is rps13p [H]

Identifier: 218884677

GI number: 218884677

Start: 1267248

End: 1267772

Strand: Reverse

Name: rps13p [H]

Synonym: DKAM_1366

Alternate gene names: 218884677

Gene position: 1267772-1267248 (Counterclockwise)

Preceding gene: 218884678

Following gene: 218884676

Centisome position: 92.86

GC content: 45.14

Gene sequence:

>525_bases
ATGCATATGCTTATCGAGTTAAGTCCGGTGAAAGAATTGAGTGAGAGGGAGAGTTTTAGACAGATAGTTAGAATGCTGGA
AACCGATGTCGATGGAGAGCTTCCATTAGTTTACGGTCTCTCAGAAGTAAAGGGCTTGGGCTATACATTTAGTCTAGCAA
TATGTAGAATACTAGGGTTAAACCCTGAACAACGCGTTGGTTTCCTAAGCGATGACGTGGTTAAGAGTATCGAAGAGGTT
GTACGCAACCCTGGGAAATACGGTATTCCATCATGGATCTATAATAGGCAGAAGGATTACACAACAGGCCAGAATCTTCA
CTTAACTGGTGCAAACCTAGTATACTATGTGAAGGAAGATATTGAAAGGGAGAAACGCGTAAAGAGCTGGCGCGGTATAA
GGCATGCCCTGGGCTTGAAAGTTAGGGGCCAGAGAACTAGGACAACAGGTAGAACAGGTGTAACCGTGGGTGTGAGGAAG
AAGAAAGCCACCCAGCAACAGCAAAGCAAGAAGACAGAGGGGTGA

Upstream 100 bases:

>100_bases
TATATAAACCTATATAAGACCTGAACCCCTCTAACTCGAGGGAAAAGTGTTTTAAAGCTAAGCTTTAAAAACCGTTATCA
GTTAATTATGTTGAGTAGTT

Downstream 100 bases:

>100_bases
GTTAGATGGGCGACCCACGCAAACCAAGGAAATCTTATGAGGGTCCCCGGCATCCATGGCGTCGCGATATATTAATGTAT
GAAATGAAGCTGATGGGTAC

Product: 30S ribosomal protein S13P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MHMLIELSPVKELSERESFRQIVRMLETDVDGELPLVYGLSEVKGLGYTFSLAICRILGLNPEQRVGFLSDDVVKSIEEV
VRNPGKYGIPSWIYNRQKDYTTGQNLHLTGANLVYYVKEDIEREKRVKSWRGIRHALGLKVRGQRTRTTGRTGVTVGVRK
KKATQQQQSKKTEG

Sequences:

>Translated_174_residues
MHMLIELSPVKELSERESFRQIVRMLETDVDGELPLVYGLSEVKGLGYTFSLAICRILGLNPEQRVGFLSDDVVKSIEEV
VRNPGKYGIPSWIYNRQKDYTTGQNLHLTGANLVYYVKEDIEREKRVKSWRGIRHALGLKVRGQRTRTTGRTGVTVGVRK
KKATQQQQSKKTEG
>Mature_174_residues
MHMLIELSPVKELSERESFRQIVRMLETDVDGELPLVYGLSEVKGLGYTFSLAICRILGLNPEQRVGFLSDDVVKSIEEV
VRNPGKYGIPSWIYNRQKDYTTGQNLHLTGANLVYYVKEDIEREKRVKSWRGIRHALGLKVRGQRTRTTGRTGVTVGVRK
KKATQQQQSKKTEG

Specific function: Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicat

COG id: COG0099

COG function: function code J; Ribosomal protein S13

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S13P family [H]

Homologues:

Organism=Homo sapiens, GI11968182, Length=146, Percent_Identity=39.7260273972603, Blast_Score=122, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17542018, Length=147, Percent_Identity=40.8163265306122, Blast_Score=125, Evalue=1e-29,
Organism=Saccharomyces cerevisiae, GI6323615, Length=139, Percent_Identity=40.2877697841727, Blast_Score=127, Evalue=1e-30,
Organism=Saccharomyces cerevisiae, GI6320658, Length=139, Percent_Identity=40.2877697841727, Blast_Score=127, Evalue=1e-30,
Organism=Drosophila melanogaster, GI17136882, Length=146, Percent_Identity=39.041095890411, Blast_Score=120, Evalue=4e-28,
Organism=Drosophila melanogaster, GI24656100, Length=146, Percent_Identity=39.041095890411, Blast_Score=120, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001892
- InterPro:   IPR010979
- InterPro:   IPR019977
- InterPro:   IPR018269 [H]

Pfam domain/function: PF00416 Ribosomal_S13 [H]

EC number: NA

Molecular weight: Translated: 19849; Mature: 19849

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: PS00646 RIBOSOMAL_S13_1 ; PS50159 RIBOSOMAL_S13_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHMLIELSPVKELSERESFRQIVRMLETDVDGELPLVYGLSEVKGLGYTFSLAICRILGL
CCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECHHHHCCCCHHHHHHHHHHHCC
NPEQRVGFLSDDVVKSIEEVVRNPGKYGIPSWIYNRQKDYTTGQNLHLTGANLVYYVKED
CHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCEEEEECCCEEEHHHHH
IEREKRVKSWRGIRHALGLKVRGQRTRTTGRTGVTVGVRKKKATQQQQSKKTEG
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MHMLIELSPVKELSERESFRQIVRMLETDVDGELPLVYGLSEVKGLGYTFSLAICRILGL
CCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECHHHHCCCCHHHHHHHHHHHCC
NPEQRVGFLSDDVVKSIEEVVRNPGKYGIPSWIYNRQKDYTTGQNLHLTGANLVYYVKED
CHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCEEEEECCCEEEHHHHH
IEREKRVKSWRGIRHALGLKVRGQRTRTTGRTGVTVGVRKKKATQQQQSKKTEG
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA