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The map label for this gene is rpl18e [H]

Identifier: 218884673

GI number: 218884673

Start: 1265087

End: 1265449

Strand: Reverse

Name: rpl18e [H]

Synonym: DKAM_1362

Alternate gene names: 218884673

Gene position: 1265449-1265087 (Counterclockwise)

Preceding gene: 218884674

Following gene: 218884672

Centisome position: 92.69

GC content: 43.25

Gene sequence:

>363_bases
ATGAGCAGGCTGAGGAAAACAAATATAGTTTTAAGGAAAGTGATAGAGGAGTTGAGGAAGCAAGCCTCTATAAATAACGC
ACCAATATGGAGTAGTATAGCTGAGGAATTATCCAAGCCAACCCGTAGAAGGAGGGCTGTGAATATCAGTAGGATAAATA
GATACAGTAAGCCCGGGGACGTTGTAGTAGTGCCTGGAAAAGTACTTGGTGCAGGTAATATAGATCACCCGGTTACTGTG
GCAGCATTCGGATTCTCAAGGACAGCACTTGAGAAAATAGTGAAGAGTGGTGGAAGAGCAATATTTATCCTCGACCTTGT
TAAGGAGAACCCTACTGGAAGCAGCATCAAGATAATTGGGTGA

Upstream 100 bases:

>100_bases
GAGCTCTGAATGCTAGAAATATTTTAATAGAGGCAATAAACATTCTAAGTAGAAAACTAGATGCTTTCATAGATGAGTTG
AGAAGGAATGGTGTCGCTGT

Downstream 100 bases:

>100_bases
GCTCGATGAGTGAGGAGAAAGTACTCTACATAGATGCATCGAACCAGATATTGGGGCGTTTAGCGAGTATTATTGCTAAG
AAGTTGCTCGAGGGATATAG

Product: 50S ribosomal protein L18e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MSRLRKTNIVLRKVIEELRKQASINNAPIWSSIAEELSKPTRRRRAVNISRINRYSKPGDVVVVPGKVLGAGNIDHPVTV
AAFGFSRTALEKIVKSGGRAIFILDLVKENPTGSSIKIIG

Sequences:

>Translated_120_residues
MSRLRKTNIVLRKVIEELRKQASINNAPIWSSIAEELSKPTRRRRAVNISRINRYSKPGDVVVVPGKVLGAGNIDHPVTV
AAFGFSRTALEKIVKSGGRAIFILDLVKENPTGSSIKIIG
>Mature_119_residues
SRLRKTNIVLRKVIEELRKQASINNAPIWSSIAEELSKPTRRRRAVNISRINRYSKPGDVVVVPGKVLGAGNIDHPVTVA
AFGFSRTALEKIVKSGGRAIFILDLVKENPTGSSIKIIG

Specific function: Unknown

COG id: COG1727

COG function: function code J; Ribosomal protein L18E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L18e family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005749
- InterPro:   IPR001196
- InterPro:   IPR021131
- InterPro:   IPR022947
- InterPro:   IPR021132 [H]

Pfam domain/function: PF00828 Ribosomal_L18e [H]

EC number: NA

Molecular weight: Translated: 13159; Mature: 13027

Theoretical pI: Translated: 11.79; Mature: 11.79

Prosite motif: PS00475 RIBOSOMAL_L15

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRLRKTNIVLRKVIEELRKQASINNAPIWSSIAEELSKPTRRRRAVNISRINRYSKPGD
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCC
VVVVPGKVLGAGNIDHPVTVAAFGFSRTALEKIVKSGGRAIFILDLVKENPTGSSIKIIG
EEEECCCEEECCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEEC
>Mature Secondary Structure 
SRLRKTNIVLRKVIEELRKQASINNAPIWSSIAEELSKPTRRRRAVNISRINRYSKPGD
CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCC
VVVVPGKVLGAGNIDHPVTVAAFGFSRTALEKIVKSGGRAIFILDLVKENPTGSSIKIIG
EEEECCCEEECCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479 [H]