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The map label for this gene is rpoN [H]

Identifier: 218884670

GI number: 218884670

Start: 1264001

End: 1264231

Strand: Reverse

Name: rpoN [H]

Synonym: DKAM_1359

Alternate gene names: 218884670

Gene position: 1264231-1264001 (Counterclockwise)

Preceding gene: 218884671

Following gene: 218884669

Centisome position: 92.6

GC content: 40.26

Gene sequence:

>231_bases
ATGGCAGAAGAGCTACAGGTAGGTGGGATCTTGTTATTCCCAGTTAGATGTTTCACCTGTGGTAAACCCATTGGGCACTT
ATGGGAGGAGTATATTAAAAGAGTTGAGAACGGTGAGAACCCGGCTAAAGTATTAGATGATCTCGGTGTGAAAAGGTATT
GTTGCAGGAGAATGTTTTTATCATACACGGATATATCAAAGGAGATATTATATTTCCCTAAGATCTCGTAG

Upstream 100 bases:

>100_bases
AGGTGAAATCCCTATTTAAAGAATATGATAGGCACATGCTAAGCGGTGATCCACGTCAGACAGAGCCTAAGAAATGGGGT
AGATATAGTGCTAGAAGGAG

Downstream 100 bases:

>100_bases
GAGGTGGTAGTGAATGAGCGATATACCTGAAGGAGAGGCACCTGTTTCAAAACCCGAGAGCGGAGTAATTGAGCTACTCG
TACCAATTGAGAAATACTTA

Product: DNA-directed RNA polymerase subunit N

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 76; Mature: 75

Protein sequence:

>76_residues
MAEELQVGGILLFPVRCFTCGKPIGHLWEEYIKRVENGENPAKVLDDLGVKRYCCRRMFLSYTDISKEILYFPKIS

Sequences:

>Translated_76_residues
MAEELQVGGILLFPVRCFTCGKPIGHLWEEYIKRVENGENPAKVLDDLGVKRYCCRRMFLSYTDISKEILYFPKIS
>Mature_75_residues
AEELQVGGILLFPVRCFTCGKPIGHLWEEYIKRVENGENPAKVLDDLGVKRYCCRRMFLSYTDISKEILYFPKIS

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1644

COG function: function code K; DNA-directed RNA polymerase, subunit N (RpoN/RPB10)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoN/eukaryotic RPB10 RNA polymerase subunit family [H]

Homologues:

Organism=Homo sapiens, GI10863925, Length=66, Percent_Identity=42.4242424242424, Blast_Score=70, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17509857, Length=64, Percent_Identity=45.3125, Blast_Score=68, Evalue=7e-13,
Organism=Saccharomyces cerevisiae, GI6324784, Length=63, Percent_Identity=42.8571428571429, Blast_Score=64, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24649759, Length=65, Percent_Identity=43.0769230769231, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR000268
- InterPro:   IPR020789
- ProDom:   PD006539 [H]

Pfam domain/function: PF01194 RNA_pol_N [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 8830; Mature: 8698

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: PS01112 RNA_POL_N_8KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
5.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEELQVGGILLFPVRCFTCGKPIGHLWEEYIKRVENGENPAKVLDDLGVKRYCCRRMFL
CCCCCCCCCEEEHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHH
SYTDISKEILYFPKIS
HHHHHCHHHHCCCCCC
>Mature Secondary Structure 
AEELQVGGILLFPVRCFTCGKPIGHLWEEYIKRVENGENPAKVLDDLGVKRYCCRRMFL
CCCCCCCCEEEHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHH
SYTDISKEILYFPKIS
HHHHHCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA