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The map label for this gene is fni [H]

Identifier: 218884667

GI number: 218884667

Start: 1261218

End: 1262390

Strand: Reverse

Name: fni [H]

Synonym: DKAM_1356

Alternate gene names: 218884667

Gene position: 1262390-1261218 (Counterclockwise)

Preceding gene: 218884668

Following gene: 218884666

Centisome position: 92.47

GC content: 44.93

Gene sequence:

>1173_bases
GTGAGTGCTAAGCTAATATGCCGGCTTATATATTTAAGGAAGGTTGTATTAAGCATGGATGAGATACAGAATAGGAAACT
ACACCATATAAGGTTAGCACTGGATCCCAGGGTCGACTTCAAAGACCATTGTAGTGAGATATATAGAGAGATACAGCTCG
TGCATCAAGCTTTACCTGGATTAGACTTCGATGAAGTGGATGTGAAGCAAGTGTTTTTAGGCTACAGGCTAGAAGCCCCT
ATAATGATAACGGGTATGACGGGAGGGCATCCATCACTAGTCAGCATAAATAAAATGCTTGCAACTCTTGCAGAGAAGAA
GCGAGTAGCCATAGGTGTCGGTAGCCAGAGAGCCATTGTTAAAAGCAACTTCAGCGAGGATGTCGTGGCAAGCTATAGGA
TCGTAAGGGAGACAGCTAGAAGTGTACCGGTAATAGGCAATATAGGTTTAAACACCCTGAGAGACATCGACACTGATACA
GTCATAAGGCTAGTTGAAGTAATAGATGCCGATGCCATAGCAATACACTTGAACCCAGCACAAGAAGTAATACAGCCTGA
AGGAGACACCCGTTTCAGCTTAGATGTGATTGATAAAGTCAAGGAATTAGTTGCATCTCTCCGTAAACCCGTTATAATCA
AGGAGGTTGGGAACGGGTTATCCATGGAGACGGTGAGGATATTCCATAATATAGGGGTGAAAATATATGATACAGCCGGT
GCATGCGGTACAAACTGGGCTCTCGTTGAAACGCTTAGAAATCAACCAGGGTCATCACGCTATGAATGCGGGCTGAAGCT
ATCCGAGTGGGGGATACCAACACCGCTCTCAGTAATAGAGACAAGGTATGTTGCCGAAGACTCATTCATTATCGCGAGCG
GCGGCGTATGGGACGGCTTTAAGGCAGCTGTGAATATAGCGATTGGTGCAGACATGGTTGGAGTAGCTAAACCCATTCTT
AAGAATATACTTGACAACGGGCTGGAACGTGCCGAGGCATATCTAGACAACTATATCTTCGAGTTAAAGACTGCGATGTT
CCTCAGCGGTGCCAGGAATATTGGTGAATTAAGGAGCAAGCCTATTATCCTCGGGCAGAAAATAGTAAACACGATGCTCC
AGAGGGGAATAAATCCCCATACCTACCTTAACAACACGAGGAGAATGAAGTGA

Upstream 100 bases:

>100_bases
TGGGAGGGAAAGCCCAGCTATTGAAATACGCGACAAGTGGTGACACCTCCGGGGATTACTCACACGTAGTTGGCTACGCT
GCTTTAAAGTTTTATATTTA

Downstream 100 bases:

>100_bases
GCGAATACTCTTTCCCACAGTTATTCGTAGAGGACGTCGACTCCGAGAGAATAATCTGCCTCAAGAACTCGGAGTACGCT
TGGGCAGGCATCCCTGAGAA

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase [H]

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MSAKLICRLIYLRKVVLSMDEIQNRKLHHIRLALDPRVDFKDHCSEIYREIQLVHQALPGLDFDEVDVKQVFLGYRLEAP
IMITGMTGGHPSLVSINKMLATLAEKKRVAIGVGSQRAIVKSNFSEDVVASYRIVRETARSVPVIGNIGLNTLRDIDTDT
VIRLVEVIDADAIAIHLNPAQEVIQPEGDTRFSLDVIDKVKELVASLRKPVIIKEVGNGLSMETVRIFHNIGVKIYDTAG
ACGTNWALVETLRNQPGSSRYECGLKLSEWGIPTPLSVIETRYVAEDSFIIASGGVWDGFKAAVNIAIGADMVGVAKPIL
KNILDNGLERAEAYLDNYIFELKTAMFLSGARNIGELRSKPIILGQKIVNTMLQRGINPHTYLNNTRRMK

Sequences:

>Translated_390_residues
MSAKLICRLIYLRKVVLSMDEIQNRKLHHIRLALDPRVDFKDHCSEIYREIQLVHQALPGLDFDEVDVKQVFLGYRLEAP
IMITGMTGGHPSLVSINKMLATLAEKKRVAIGVGSQRAIVKSNFSEDVVASYRIVRETARSVPVIGNIGLNTLRDIDTDT
VIRLVEVIDADAIAIHLNPAQEVIQPEGDTRFSLDVIDKVKELVASLRKPVIIKEVGNGLSMETVRIFHNIGVKIYDTAG
ACGTNWALVETLRNQPGSSRYECGLKLSEWGIPTPLSVIETRYVAEDSFIIASGGVWDGFKAAVNIAIGADMVGVAKPIL
KNILDNGLERAEAYLDNYIFELKTAMFLSGARNIGELRSKPIILGQKIVNTMLQRGINPHTYLNNTRRMK
>Mature_389_residues
SAKLICRLIYLRKVVLSMDEIQNRKLHHIRLALDPRVDFKDHCSEIYREIQLVHQALPGLDFDEVDVKQVFLGYRLEAPI
MITGMTGGHPSLVSINKMLATLAEKKRVAIGVGSQRAIVKSNFSEDVVASYRIVRETARSVPVIGNIGLNTLRDIDTDTV
IRLVEVIDADAIAIHLNPAQEVIQPEGDTRFSLDVIDKVKELVASLRKPVIIKEVGNGLSMETVRIFHNIGVKIYDTAGA
CGTNWALVETLRNQPGSSRYECGLKLSEWGIPTPLSVIETRYVAEDSFIIASGGVWDGFKAAVNIAIGADMVGVAKPILK
NILDNGLERAEAYLDNYIFELKTAMFLSGARNIGELRSKPIILGQKIVNTMLQRGINPHTYLNNTRRMK

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) [H]

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179 [H]

Pfam domain/function: PF01070 FMN_dh [H]

EC number: =5.3.3.2 [H]

Molecular weight: Translated: 43297; Mature: 43166

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: PS00912 DHODEHASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAKLICRLIYLRKVVLSMDEIQNRKLHHIRLALDPRVDFKDHCSEIYREIQLVHQALPG
CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
LDFDEVDVKQVFLGYRLEAPIMITGMTGGHPSLVSINKMLATLAEKKRVAIGVGSQRAIV
CCCCHHHHHHHHHCEEECCCEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCHHH
KSNFSEDVVASYRIVRETARSVPVIGNIGLNTLRDIDTDTVIRLVEVIDADAIAIHLNPA
HCCCCHHHHHHHHHHHHHHHCCCEEECCCCHHHHCCCHHHHHHHHHHHCCCEEEEEECCH
QEVIQPEGDTRFSLDVIDKVKELVASLRKPVIIKEVGNGLSMETVRIFHNIGVKIYDTAG
HHHHCCCCCCEEEHHHHHHHHHHHHHHHCCEEEEHHCCCCCHHHHHHHHHCCEEEEECCC
ACGTNWALVETLRNQPGSSRYECGLKLSEWGIPTPLSVIETRYVAEDSFIIASGGVWDGF
CCCCCHHHHHHHHCCCCCCCHHCCCEECCCCCCCCHHHHHHHHEECCCEEEECCCCCCCH
KAAVNIAIGADMVGVAKPILKNILDNGLERAEAYLDNYIFELKTAMFLSGARNIGELRSK
HHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCC
PIILGQKIVNTMLQRGINPHTYLNNTRRMK
CEEEHHHHHHHHHHCCCCCCHHCCCCCCCC
>Mature Secondary Structure 
SAKLICRLIYLRKVVLSMDEIQNRKLHHIRLALDPRVDFKDHCSEIYREIQLVHQALPG
CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
LDFDEVDVKQVFLGYRLEAPIMITGMTGGHPSLVSINKMLATLAEKKRVAIGVGSQRAIV
CCCCHHHHHHHHHCEEECCCEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCHHH
KSNFSEDVVASYRIVRETARSVPVIGNIGLNTLRDIDTDTVIRLVEVIDADAIAIHLNPA
HCCCCHHHHHHHHHHHHHHHCCCEEECCCCHHHHCCCHHHHHHHHHHHCCCEEEEEECCH
QEVIQPEGDTRFSLDVIDKVKELVASLRKPVIIKEVGNGLSMETVRIFHNIGVKIYDTAG
HHHHCCCCCCEEEHHHHHHHHHHHHHHHCCEEEEHHCCCCCHHHHHHHHHCCEEEEECCC
ACGTNWALVETLRNQPGSSRYECGLKLSEWGIPTPLSVIETRYVAEDSFIIASGGVWDGF
CCCCCHHHHHHHHCCCCCCCHHCCCEECCCCCCCCHHHHHHHHEECCCEEEECCCCCCCH
KAAVNIAIGADMVGVAKPILKNILDNGLERAEAYLDNYIFELKTAMFLSGARNIGELRSK
HHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCC
PIILGQKIVNTMLQRGINPHTYLNNTRRMK
CEEEHHHHHHHHHHCCCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11572479 [H]