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The map label for this gene is rps6e [H]

Identifier: 218884659

GI number: 218884659

Start: 1254508

End: 1255173

Strand: Reverse

Name: rps6e [H]

Synonym: DKAM_1348

Alternate gene names: 218884659

Gene position: 1255173-1254508 (Counterclockwise)

Preceding gene: 218884661

Following gene: 218884658

Centisome position: 91.94

GC content: 43.24

Gene sequence:

>666_bases
GTGGTAGATATGCCTGACTTCAAGATAGTGGTAAATGATCCGGAGGCACCTAAGAAGGAGAAATTAGTTAAAGTAAAAGT
GGAAGGAGACCCCGAAATACAACTCACAGATAAAGTGAAGGAGAAGCTGGAGCTACCAGTGTTTAAAGTAAATAGTAAAA
CAGCGAGTGAAATAGGGGCTGTCCACGGGGTAGCCACTATAAGAATGCGGCGTCCAGATACAGGGGACAAGGTGAAGTTT
ACTGGGAGAATAATCATAGATGACAACGTGCCTGATAACGTTGTGAAAGTCAGCATGGAGCAATTAATTAATGCAACGGG
ACAGAACGAGCTGGAAGGCGAGATCTTCCGCGCAAGAGCATGGCAGATAAGGATAAATGACGAGAGAACTCAAACTATTA
TCGGCCTTAAGATAGGTGATTATATTGATGGATCAATAATCGGCCTGAAAGGGGTTAAACTAGCTATAACAGGAGGTAGC
GACATAAGTGGTTTCCCAATGAGGCCTGATATAAGTGGACCGGTTAAAAAGAAGGTGTTATTATCGGGTCCACCAGGTTT
CCATCCCGAAGAAGACGGTGAACGAAGGAGAAAGACTGTTAGAGGCAACACTATAGCGCCCGATATAGTCCAAATAAACA
CGAAGATCGTATATGAATCAAAATAA

Upstream 100 bases:

>100_bases
TAAACGTTGCTTCTGCGCCCCTAATAGAGACCATTAAAAACCCTGGGTATAAAAAGGGGATACTGGGTAAAATATACCCC
AGACACCCACCGGGCAACTG

Downstream 100 bases:

>100_bases
AAGAGCGTTCTAAAGGCATGAATTATTTTTAACCATGGCAGTCTCTGCACATGAGGATTGGGCGGCTTGGATTTATAAAT
GAATCTAAACTAAATTATTC

Product: 30S ribosomal protein S6e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MVDMPDFKIVVNDPEAPKKEKLVKVKVEGDPEIQLTDKVKEKLELPVFKVNSKTASEIGAVHGVATIRMRRPDTGDKVKF
TGRIIIDDNVPDNVVKVSMEQLINATGQNELEGEIFRARAWQIRINDERTQTIIGLKIGDYIDGSIIGLKGVKLAITGGS
DISGFPMRPDISGPVKKKVLLSGPPGFHPEEDGERRRKTVRGNTIAPDIVQINTKIVYESK

Sequences:

>Translated_221_residues
MVDMPDFKIVVNDPEAPKKEKLVKVKVEGDPEIQLTDKVKEKLELPVFKVNSKTASEIGAVHGVATIRMRRPDTGDKVKF
TGRIIIDDNVPDNVVKVSMEQLINATGQNELEGEIFRARAWQIRINDERTQTIIGLKIGDYIDGSIIGLKGVKLAITGGS
DISGFPMRPDISGPVKKKVLLSGPPGFHPEEDGERRRKTVRGNTIAPDIVQINTKIVYESK
>Mature_221_residues
MVDMPDFKIVVNDPEAPKKEKLVKVKVEGDPEIQLTDKVKEKLELPVFKVNSKTASEIGAVHGVATIRMRRPDTGDKVKF
TGRIIIDDNVPDNVVKVSMEQLINATGQNELEGEIFRARAWQIRINDERTQTIIGLKIGDYIDGSIIGLKGVKLAITGGS
DISGFPMRPDISGPVKKKVLLSGPPGFHPEEDGERRRKTVRGNTIAPDIVQINTKIVYESK

Specific function: Unknown

COG id: COG2125

COG function: function code J; Ribosomal protein S6E (S10)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6e family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6325167, Length=97, Percent_Identity=38.1443298969072, Blast_Score=65, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6319658, Length=97, Percent_Identity=38.1443298969072, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001377
- InterPro:   IPR020924
- InterPro:   IPR018282 [H]

Pfam domain/function: PF01092 Ribosomal_S6e [H]

EC number: NA

Molecular weight: Translated: 24420; Mature: 24420

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS00578 RIBOSOMAL_S6E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDMPDFKIVVNDPEAPKKEKLVKVKVEGDPEIQLTDKVKEKLELPVFKVNSKTASEIGA
CCCCCCCEEEECCCCCCCCCCEEEEEECCCCCEEEHHHHHHHHCCCEEEECCCCHHHHHH
VHGVATIRMRRPDTGDKVKFTGRIIIDDNVPDNVVKVSMEQLINATGQNELEGEIFRARA
HCCEEEEEEECCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEE
WQIRINDERTQTIIGLKIGDYIDGSIIGLKGVKLAITGGSDISGFPMRPDISGPVKKKVL
EEEEECCCCEEEEEEEEECCCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCEEEE
LSGPPGFHPEEDGERRRKTVRGNTIAPDIVQINTKIVYESK
EECCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEEEEEECC
>Mature Secondary Structure
MVDMPDFKIVVNDPEAPKKEKLVKVKVEGDPEIQLTDKVKEKLELPVFKVNSKTASEIGA
CCCCCCCEEEECCCCCCCCCCEEEEEECCCCCEEEHHHHHHHHCCCEEEECCCCHHHHHH
VHGVATIRMRRPDTGDKVKFTGRIIIDDNVPDNVVKVSMEQLINATGQNELEGEIFRARA
HCCEEEEEEECCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEE
WQIRINDERTQTIIGLKIGDYIDGSIIGLKGVKLAITGGSDISGFPMRPDISGPVKKKVL
EEEEECCCCEEEEEEEEECCCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCEEEE
LSGPPGFHPEEDGERRRKTVRGNTIAPDIVQINTKIVYESK
EECCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA