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The map label for this gene is 218884632

Identifier: 218884632

GI number: 218884632

Start: 1234553

End: 1235086

Strand: Reverse

Name: 218884632

Synonym: DKAM_1321

Alternate gene names: NA

Gene position: 1235086-1234553 (Counterclockwise)

Preceding gene: 218884633

Following gene: 218884631

Centisome position: 90.47

GC content: 43.07

Gene sequence:

>534_bases
TTGATTCTTATAACCACATCCCATAGGCCCTCTCAGAGGGTAAGATCTTTTGCCAAGGATCTCTCCTCAGTCATACCTTA
CTCGATCAGGGTTACCCGTGGAAAAAAGACGTTGGAGGACCTGGTTATTGAGGCCTATAAGAATGGCTTGTCCTACATAG
CCATAATTGGTGAGAGAAGGGGGAATCCATCAACTATAGAGATCTATAAGGTGGACTCCTCCATAATGCCACCTAGTGCT
ATAAGGATATCAACACTATTATTAAGTGGAGTAAGGCTCTCAAGAGAGAATCCTGAGTCGATTAGAGTATATAATCCCCG
TAGTGTTAAAGTAGAGTATGATCAATGCGTGACAGACGAGTGCTTTGCCCTTGCAGATATACTACTCTCTATAACGTCGA
AAGCTTTCTCTCGTCAACCAGATGTTAAAATAGCCCTTGAGGAAAGCGAGTACGTAGATGTCGAATTCTACAGTTCAACC
AACCATCGAATAGGGCCATCACTCAGGATTGCAAGGGTGATCCTATATAAGTGA

Upstream 100 bases:

>100_bases
CTTGCAAGAAATGTGGGGCTAAATGGGCTGGAGGAGCATATATGCCTAAGACAGAGTCGGCCAAATTATTCTCAGATATC
ATTATAAGGGAGTAGACTAC

Downstream 100 bases:

>100_bases
GAAAGTAGAGGTAGAATACGTGCTCGGGGTATATGAGAAGGTAGCCGAGGCTATACTCGCATCCATTAAACCCGACCTCA
ATGATATCCCAAAAGAATGC

Product: putative brix domain-containing ribosomal biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MILITTSHRPSQRVRSFAKDLSSVIPYSIRVTRGKKTLEDLVIEAYKNGLSYIAIIGERRGNPSTIEIYKVDSSIMPPSA
IRISTLLLSGVRLSRENPESIRVYNPRSVKVEYDQCVTDECFALADILLSITSKAFSRQPDVKIALEESEYVDVEFYSST
NHRIGPSLRIARVILYK

Sequences:

>Translated_177_residues
MILITTSHRPSQRVRSFAKDLSSVIPYSIRVTRGKKTLEDLVIEAYKNGLSYIAIIGERRGNPSTIEIYKVDSSIMPPSA
IRISTLLLSGVRLSRENPESIRVYNPRSVKVEYDQCVTDECFALADILLSITSKAFSRQPDVKIALEESEYVDVEFYSST
NHRIGPSLRIARVILYK
>Mature_177_residues
MILITTSHRPSQRVRSFAKDLSSVIPYSIRVTRGKKTLEDLVIEAYKNGLSYIAIIGERRGNPSTIEIYKVDSSIMPPSA
IRISTLLLSGVRLSRENPESIRVYNPRSVKVEYDQCVTDECFALADILLSITSKAFSRQPDVKIALEESEYVDVEFYSST
NHRIGPSLRIARVILYK

Specific function: Probably involved in the biogenesis of the ribosome [H]

COG id: COG2136

COG function: function code JA; Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Brix domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004154
- InterPro:   IPR007109 [H]

Pfam domain/function: PF04427 Brix [H]

EC number: NA

Molecular weight: Translated: 20013; Mature: 20013

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS50833 BRIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILITTSHRPSQRVRSFAKDLSSVIPYSIRVTRGKKTLEDLVIEAYKNGLSYIAIIGERR
CEEEECCCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCC
GNPSTIEIYKVDSSIMPPSAIRISTLLLSGVRLSRENPESIRVYNPRSVKVEYDQCVTDE
CCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEHHHCCCHH
CFALADILLSITSKAFSRQPDVKIALEESEYVDVEFYSSTNHRIGPSLRIARVILYK
HHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEECCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MILITTSHRPSQRVRSFAKDLSSVIPYSIRVTRGKKTLEDLVIEAYKNGLSYIAIIGERR
CEEEECCCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCC
GNPSTIEIYKVDSSIMPPSAIRISTLLLSGVRLSRENPESIRVYNPRSVKVEYDQCVTDE
CCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEHHHCCCHH
CFALADILLSITSKAFSRQPDVKIALEESEYVDVEFYSSTNHRIGPSLRIARVILYK
HHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEECCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA