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The map label for this gene is tfe [H]

Identifier: 218884577

GI number: 218884577

Start: 1184680

End: 1185159

Strand: Reverse

Name: tfe [H]

Synonym: DKAM_1266

Alternate gene names: 218884577

Gene position: 1185159-1184680 (Counterclockwise)

Preceding gene: 218884579

Following gene: 218884576

Centisome position: 86.81

GC content: 42.08

Gene sequence:

>480_bases
TTGATTAAGGGAATCTATGGAGATCCCGGGTACAAATTACTAATGCATATAATAGAGCATGGATATGTTGCCGAGGAGCT
CCTCACTCATGACACGGGGATAAAGTCTAATGAAGGCAGGAAAATACTCCAGAAGATGTCAGAGGAAAACATCGTTATTC
CAGGCAAGCTCAGAACACAAGAGGGGGTTCTCCATATATGGAGACTCAATCCACCAGCTCTTAAAAACCTCTTACTCCAG
AGACTCCGTAAAACACGTGAAAAACTAGTGTTACGATTGAATTTTGAGGAGGAAAACATTCTCTACGAGTGTCCACAGTG
CGGTAGAAGATACACGCTTGACGAAGCATACGCTAACGATTATATATGCCCCGTGGATGGTGAGGTATTGGTTGAAGCCG
ATAAGTCTAAGACGGTGGAAGTCTTAAAGGAGTTGATTAGTAAAGTAGATAATTTAATTAAGAGGGTTGAACGGGTTTAG

Upstream 100 bases:

>100_bases
AAGCAAGGGATGGTGAAGGAAACTGAGCAAAACTGTTAAAACTGAGGAAGAAAGAGCAGTAAATAAGGTTGATGAGGAAG
TCCTCGGCGTAGTAAAGGAG

Downstream 100 bases:

>100_bases
AAGTGAAGACTGTTTATAAATACATAGATGTATTCTCTGGTGCAGGGGGCTTCTCACTAGGATTCCATCTCACAGGTAGA
TTCAAATCCCTGCTAGCCAT

Product: transcription factor TFIIE subunit alpha

Products: NA

Alternate protein names: TFE; TFIIE subunit alpha homolog; Transcription initiation factor TFIIE [H]

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MIKGIYGDPGYKLLMHIIEHGYVAEELLTHDTGIKSNEGRKILQKMSEENIVIPGKLRTQEGVLHIWRLNPPALKNLLLQ
RLRKTREKLVLRLNFEEENILYECPQCGRRYTLDEAYANDYICPVDGEVLVEADKSKTVEVLKELISKVDNLIKRVERV

Sequences:

>Translated_159_residues
MIKGIYGDPGYKLLMHIIEHGYVAEELLTHDTGIKSNEGRKILQKMSEENIVIPGKLRTQEGVLHIWRLNPPALKNLLLQ
RLRKTREKLVLRLNFEEENILYECPQCGRRYTLDEAYANDYICPVDGEVLVEADKSKTVEVLKELISKVDNLIKRVERV
>Mature_159_residues
MIKGIYGDPGYKLLMHIIEHGYVAEELLTHDTGIKSNEGRKILQKMSEENIVIPGKLRTQEGVLHIWRLNPPALKNLLLQ
RLRKTREKLVLRLNFEEENILYECPQCGRRYTLDEAYANDYICPVDGEVLVEADKSKTVEVLKELISKVDNLIKRVERV

Specific function: Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (tbp), and transcription factor B (tfb) and RNA po

COG id: COG1675

COG function: function code K; Transcription initiation factor IIE, alpha subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH TFE/IIEalpha-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016481
- InterPro:   IPR017919
- InterPro:   IPR011991 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18427; Mature: 18427

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKGIYGDPGYKLLMHIIEHGYVAEELLTHDTGIKSNEGRKILQKMSEENIVIPGKLRTQ
CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEECCCCCCCC
EGVLHIWRLNPPALKNLLLQRLRKTREKLVLRLNFEEENILYECPQCGRRYTLDEAYAND
CCEEEEEECCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEECCCCCCCCCCHHHHCCC
YICPVDGEVLVEADKSKTVEVLKELISKVDNLIKRVERV
EECCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIKGIYGDPGYKLLMHIIEHGYVAEELLTHDTGIKSNEGRKILQKMSEENIVIPGKLRTQ
CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEECCCCCCCC
EGVLHIWRLNPPALKNLLLQRLRKTREKLVLRLNFEEENILYECPQCGRRYTLDEAYAND
CCEEEEEECCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEECCCCCCCCCCHHHHCCC
YICPVDGEVLVEADKSKTVEVLKELISKVDNLIKRVERV
EECCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA