Click here to switch to the map view.

The map label for this gene is dpa [H]

Identifier: 218884418

GI number: 218884418

Start: 1046612

End: 1047502

Strand: Reverse

Name: dpa [H]

Synonym: DKAM_1107

Alternate gene names: 218884418

Gene position: 1047502-1046612 (Counterclockwise)

Preceding gene: 218884419

Following gene: 218884417

Centisome position: 76.73

GC content: 44.67

Gene sequence:

>891_bases
TTGTTTAAGAAGCTGAGGGAAGTATTCTCCAGGTTTATTGAGACAGCATCATCCCTCCTCTCATCAAGGGAGAAGCTACT
GGAGTCGATTGAAGAGCTTAAGCTCAACCTTGTAGCCAATGATGTGGCCTATGAAGTAGCTGAGAACATAGCCTCGGAGT
TAACGATGCGTGTTGAGGAGGGATCGATTAAGAGTAGAGAGGAACTCGTAAAGGCGTTAAGGGAGATATTGTTGAGCTAC
TTCACCGGGTTAAATAGCATTGACTTACTCAGTTTGGCTAATAGTAGGAAGCCATTGAAATTAGTCTTTCTTGGGGTTAA
CGGCGTGGGGAAGACAACCACTATAGCTAAAGTAGCTGTATACATGAGGGAGAACGGGCTTAAACCCCTAATGGTTGCGG
CAGATACTTTCAGGGCTGGAGCCCAGGAGCAGTTGAAGATACACTCAGAGAGAACGGGTATCCCTGTTTTCACTGGTAAA
TACGGCTCGGATCCGGCTGCCCTGGTCTATGATGCAATACAGTATGGATTGAACAGGGGTTTCAACGTCTTCCTAATTGA
TACAGCTGGGAGAATGCATGTCGACGTTGACTTGGTGAACGAGCTTAAGAAGATTGTAAGAGTTGCCAAGCCCGATGTAA
AAATACTTGTTGTAGATGCTTTAACAGGTAACGATGCATTAGAGCAAGCCAGGTTCTTTAATGAGGCTGTTGGCGTTGAC
TGCGTAGTGGTTACGAAGGTCGACGCCTATGAAGAAGGAGGCGTACCATTAAGCCTAGTCTACATCTTAAAGAAACCAGT
GTTATTCATAGGGGTTGGACAGGACTATAAGGATTTAAAACCTTTTAACCCAATCGAATACGTTGAGAGGATTTTAACTG
GTTTACAGTGA

Upstream 100 bases:

>100_bases
AGAAGAGGTATAGTGTTGTACTAGAGGAATTAAATAGGCTACAACAGTTGTTATCCCGTGGGTACGGTGGATCTCAGAGC
AAGGGTGGAGGATAAGGTAG

Downstream 100 bases:

>100_bases
AATAGGGGTGTAATGACTTGGATTTACGTGAGCTAGTAGAGGCTTGGAAGAGGATTTTACTAATAGCTACGAAGCCCGAG
TGGGATGAGTACTGGACCAT

Product: putative signal recognition particle protein

Products: NA

Alternate protein names: Docking protein; P41 [H]

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MFKKLREVFSRFIETASSLLSSREKLLESIEELKLNLVANDVAYEVAENIASELTMRVEEGSIKSREELVKALREILLSY
FTGLNSIDLLSLANSRKPLKLVFLGVNGVGKTTTIAKVAVYMRENGLKPLMVAADTFRAGAQEQLKIHSERTGIPVFTGK
YGSDPAALVYDAIQYGLNRGFNVFLIDTAGRMHVDVDLVNELKKIVRVAKPDVKILVVDALTGNDALEQARFFNEAVGVD
CVVVTKVDAYEEGGVPLSLVYILKKPVLFIGVGQDYKDLKPFNPIEYVERILTGLQ

Sequences:

>Translated_296_residues
MFKKLREVFSRFIETASSLLSSREKLLESIEELKLNLVANDVAYEVAENIASELTMRVEEGSIKSREELVKALREILLSY
FTGLNSIDLLSLANSRKPLKLVFLGVNGVGKTTTIAKVAVYMRENGLKPLMVAADTFRAGAQEQLKIHSERTGIPVFTGK
YGSDPAALVYDAIQYGLNRGFNVFLIDTAGRMHVDVDLVNELKKIVRVAKPDVKILVVDALTGNDALEQARFFNEAVGVD
CVVVTKVDAYEEGGVPLSLVYILKKPVLFIGVGQDYKDLKPFNPIEYVERILTGLQ
>Mature_296_residues
MFKKLREVFSRFIETASSLLSSREKLLESIEELKLNLVANDVAYEVAENIASELTMRVEEGSIKSREELVKALREILLSY
FTGLNSIDLLSLANSRKPLKLVFLGVNGVGKTTTIAKVAVYMRENGLKPLMVAADTFRAGAQEQLKIHSERTGIPVFTGK
YGSDPAALVYDAIQYGLNRGFNVFLIDTAGRMHVDVDLVNELKKIVRVAKPDVKILVVDALTGNDALEQARFFNEAVGVD
CVVVTKVDAYEEGGVPLSLVYILKKPVLFIGVGQDYKDLKPFNPIEYVERILTGLQ

Specific function: Probably involved in the signal sequence recognition [H]

COG id: COG0552

COG function: function code U; Signal recognition particle GTPase

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GTP-binding SRP family [H]

Homologues:

Organism=Homo sapiens, GI23308697, Length=295, Percent_Identity=35.2542372881356, Blast_Score=176, Evalue=3e-44,
Organism=Homo sapiens, GI295424842, Length=295, Percent_Identity=35.2542372881356, Blast_Score=176, Evalue=3e-44,
Organism=Homo sapiens, GI4507215, Length=249, Percent_Identity=32.5301204819277, Blast_Score=140, Evalue=2e-33,
Organism=Homo sapiens, GI226371618, Length=192, Percent_Identity=34.8958333333333, Blast_Score=138, Evalue=5e-33,
Organism=Homo sapiens, GI89061728, Length=129, Percent_Identity=31.7829457364341, Blast_Score=86, Evalue=6e-17,
Organism=Escherichia coli, GI1789874, Length=258, Percent_Identity=37.2093023255814, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1788963, Length=306, Percent_Identity=34.3137254901961, Blast_Score=157, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI193206261, Length=288, Percent_Identity=36.8055555555556, Blast_Score=170, Evalue=9e-43,
Organism=Caenorhabditis elegans, GI17539958, Length=193, Percent_Identity=37.3056994818653, Blast_Score=145, Evalue=3e-35,
Organism=Saccharomyces cerevisiae, GI6320498, Length=298, Percent_Identity=34.2281879194631, Blast_Score=150, Evalue=3e-37,
Organism=Saccharomyces cerevisiae, GI6325345, Length=197, Percent_Identity=36.5482233502538, Blast_Score=145, Evalue=6e-36,
Organism=Drosophila melanogaster, GI24641198, Length=291, Percent_Identity=33.3333333333333, Blast_Score=158, Evalue=4e-39,
Organism=Drosophila melanogaster, GI17647949, Length=193, Percent_Identity=35.7512953367876, Blast_Score=134, Evalue=6e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004390
- InterPro:   IPR003593
- InterPro:   IPR000897
- InterPro:   IPR013822 [H]

Pfam domain/function: PF00448 SRP54; PF02881 SRP54_N [H]

EC number: NA

Molecular weight: Translated: 32789; Mature: 32789

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS00300 SRP54

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKKLREVFSRFIETASSLLSSREKLLESIEELKLNLVANDVAYEVAENIASELTMRVEE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GSIKSREELVKALREILLSYFTGLNSIDLLSLANSRKPLKLVFLGVNGVGKTTTIAKVAV
CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHH
YMRENGLKPLMVAADTFRAGAQEQLKIHSERTGIPVFTGKYGSDPAALVYDAIQYGLNRG
HHHHCCCCEEEEEHHHHHCCCHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHCCC
FNVFLIDTAGRMHVDVDLVNELKKIVRVAKPDVKILVVDALTGNDALEQARFFNEAVGVD
CEEEEEECCCCEEEEHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCC
CVVVTKVDAYEEGGVPLSLVYILKKPVLFIGVGQDYKDLKPFNPIEYVERILTGLQ
EEEEEEECCCCCCCCCHHHHHHHHCCEEEEECCCCHHHCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MFKKLREVFSRFIETASSLLSSREKLLESIEELKLNLVANDVAYEVAENIASELTMRVEE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GSIKSREELVKALREILLSYFTGLNSIDLLSLANSRKPLKLVFLGVNGVGKTTTIAKVAV
CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHH
YMRENGLKPLMVAADTFRAGAQEQLKIHSERTGIPVFTGKYGSDPAALVYDAIQYGLNRG
HHHHCCCCEEEEEHHHHHCCCHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHCCC
FNVFLIDTAGRMHVDVDLVNELKKIVRVAKPDVKILVVDALTGNDALEQARFFNEAVGVD
CEEEEEECCCCEEEEHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCC
CVVVTKVDAYEEGGVPLSLVYILKKPVLFIGVGQDYKDLKPFNPIEYVERILTGLQ
EEEEEEECCCCCCCCCHHHHHHHHCCEEEEECCCCHHHCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1658539; 8935656 [H]