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The map label for this gene is ygiK [H]

Identifier: 218884402

GI number: 218884402

Start: 1030769

End: 1032103

Strand: Reverse

Name: ygiK [H]

Synonym: DKAM_1091

Alternate gene names: 218884402

Gene position: 1032103-1030769 (Counterclockwise)

Preceding gene: 218884403

Following gene: 218884401

Centisome position: 75.6

GC content: 41.8

Gene sequence:

>1335_bases
ATGCTTGAGTTCCTATCTTCAATAATATATTCTCTACCAATATGGAGTATTGCAATATTATTCATTATAATTCTGCTTTT
ACTAATATTAATAGGGATACCTGTAACATTCTCTATTGGATTATCGAGCATAATATTCTTAATACTAAATGGAAAAAGCC
TGGCAAACGCTGTCACAGCGATGATGATACCTTTACAATCCTTCCCGCTGCTGGGGGTGTATTTATTCGTATTAATGGGT
ACGGTTTTTGAGAAGGCAGGGCTAACGGAGGTAATCGTAGATGCGCTTGAACCACTAGTAGGAAGAGTGAAAGGAGGACT
CGCTGTAGTTACTGTACTTGGATGTGCATTTTTCGGGTTGCTAACAGGTGCGGTAGCAGCTACAGCAGCAGCATTCTCTA
GGATCATGGGGCCTGAAATGGAAAAGAGAGGATATTCAAGAGAATATGTGGCAGCAATATTAGCGGCATCAGCACCTCTA
GGGGCTTTCATACCTCCCAGCATCCCTGCAATAATTATAGCTACCTCCACCGGTACATCTGTTTTAACAATGTTTATGGT
TGGAGGCGCGATAGGAATAATAGTTATGGTGGCGCTGATCATATTGGCGTTGGCGACTTCATATATAAAGGGATATGGTG
GAGTAGAGAAAAGGTTTACCATACGCGAGGTATTCATTAGAGTGATAAAGGCTCTACCATTGTTGGCTGTGCCGCTTCTA
GTTCTTGCTGGCATATACCTGGGTGTATTTTCAGTAACGGAGGCTGGGGCTCTCGGGGCTCTCAGCGCTTTCATGGTTGC
GGCTTGTTATAGGAGGTTGACAGTGAGAAAGATAATTGATATTCTCCTGGAGTCGGGTAGATCTACGGCTGTAGTAATGT
TGATGATATCGACGTCGTATATATTAAACTATACATGGTCCTTAACGGGGATAAATAACTCGATGCTTCAGTTCTTCGTT
AATATATCGAAAACATACAGTCCCTATGTATCATTAACTGTACTGGCTATAATACTGGCTATACTCGGAATGTTCTTCGA
CGTAATAGTATTGGCTGTGGCATGGGGTGCAACAATAATGTCAGCGTTCACACCATACGGTATCAGCCCATATCATATCG
GGGCTCTCTTCTTGTTTGGAGTTCTACTAGGAACGGCGACGCCACCAGTAGGTGCAGCTGTATTTGTTGTATCCGATTCC
CTTAAAGTGAAAATCGAGGAGATATTTAAAGGCATAATACCATTCGTATTACTATATATGGTGCTATATATAATATTAAT
ATTCATACCAGAGACCTCTCTATGGCTACCTAGACTGCTTGGATTAACAACCTAG

Upstream 100 bases:

>100_bases
CTATTTCTATGCTGCACTAATACTTGGATTCATTTTTATTGATATACGTTACATCATGAAAGTGATCGATTTGTTTGTGA
AGCAATAAGAGGCGTCTTAA

Downstream 100 bases:

>100_bases
ACTGATTTTTACAAGCCATGTCATTAAGCCAGCCATACTCTAGGGAATCATGGGGCTTCATGATAATGGACTAGGTTTTC
AATTTAGATTAAAATATATA

Product: TRAP dicarboxylate transporter subunit DctM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MLEFLSSIIYSLPIWSIAILFIIILLLLILIGIPVTFSIGLSSIIFLILNGKSLANAVTAMMIPLQSFPLLGVYLFVLMG
TVFEKAGLTEVIVDALEPLVGRVKGGLAVVTVLGCAFFGLLTGAVAATAAAFSRIMGPEMEKRGYSREYVAAILAASAPL
GAFIPPSIPAIIIATSTGTSVLTMFMVGGAIGIIVMVALIILALATSYIKGYGGVEKRFTIREVFIRVIKALPLLAVPLL
VLAGIYLGVFSVTEAGALGALSAFMVAACYRRLTVRKIIDILLESGRSTAVVMLMISTSYILNYTWSLTGINNSMLQFFV
NISKTYSPYVSLTVLAIILAILGMFFDVIVLAVAWGATIMSAFTPYGISPYHIGALFLFGVLLGTATPPVGAAVFVVSDS
LKVKIEEIFKGIIPFVLLYMVLYIILIFIPETSLWLPRLLGLTT

Sequences:

>Translated_444_residues
MLEFLSSIIYSLPIWSIAILFIIILLLLILIGIPVTFSIGLSSIIFLILNGKSLANAVTAMMIPLQSFPLLGVYLFVLMG
TVFEKAGLTEVIVDALEPLVGRVKGGLAVVTVLGCAFFGLLTGAVAATAAAFSRIMGPEMEKRGYSREYVAAILAASAPL
GAFIPPSIPAIIIATSTGTSVLTMFMVGGAIGIIVMVALIILALATSYIKGYGGVEKRFTIREVFIRVIKALPLLAVPLL
VLAGIYLGVFSVTEAGALGALSAFMVAACYRRLTVRKIIDILLESGRSTAVVMLMISTSYILNYTWSLTGINNSMLQFFV
NISKTYSPYVSLTVLAIILAILGMFFDVIVLAVAWGATIMSAFTPYGISPYHIGALFLFGVLLGTATPPVGAAVFVVSDS
LKVKIEEIFKGIIPFVLLYMVLYIILIFIPETSLWLPRLLGLTT
>Mature_444_residues
MLEFLSSIIYSLPIWSIAILFIIILLLLILIGIPVTFSIGLSSIIFLILNGKSLANAVTAMMIPLQSFPLLGVYLFVLMG
TVFEKAGLTEVIVDALEPLVGRVKGGLAVVTVLGCAFFGLLTGAVAATAAAFSRIMGPEMEKRGYSREYVAAILAASAPL
GAFIPPSIPAIIIATSTGTSVLTMFMVGGAIGIIVMVALIILALATSYIKGYGGVEKRFTIREVFIRVIKALPLLAVPLL
VLAGIYLGVFSVTEAGALGALSAFMVAACYRRLTVRKIIDILLESGRSTAVVMLMISTSYILNYTWSLTGINNSMLQFFV
NISKTYSPYVSLTVLAIILAILGMFFDVIVLAVAWGATIMSAFTPYGISPYHIGALFLFGVLLGTATPPVGAAVFVVSDS
LKVKIEEIFKGIIPFVLLYMVLYIILIFIPETSLWLPRLLGLTT

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yiaN/ygiK family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=370, Percent_Identity=29.1891891891892, Blast_Score=121, Evalue=7e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 47420; Mature: 47420

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEFLSSIIYSLPIWSIAILFIIILLLLILIGIPVTFSIGLSSIIFLILNGKSLANAVTA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
MMIPLQSFPLLGVYLFVLMGTVFEKAGLTEVIVDALEPLVGRVKGGLAVVTVLGCAFFGL
HHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LTGAVAATAAAFSRIMGPEMEKRGYSREYVAAILAASAPLGAFIPPSIPAIIIATSTGTS
HHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHH
VLTMFMVGGAIGIIVMVALIILALATSYIKGYGGVEKRFTIREVFIRVIKALPLLAVPLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VLAGIYLGVFSVTEAGALGALSAFMVAACYRRLTVRKIIDILLESGRSTAVVMLMISTSY
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHH
ILNYTWSLTGINNSMLQFFVNISKTYSPYVSLTVLAIILAILGMFFDVIVLAVAWGATIM
HHHEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAFTPYGISPYHIGALFLFGVLLGTATPPVGAAVFVVSDSLKVKIEEIFKGIIPFVLLYM
HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
VLYIILIFIPETSLWLPRLLGLTT
HHHHHHHHHCCCHHHHHHHHCCCC
>Mature Secondary Structure
MLEFLSSIIYSLPIWSIAILFIIILLLLILIGIPVTFSIGLSSIIFLILNGKSLANAVTA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
MMIPLQSFPLLGVYLFVLMGTVFEKAGLTEVIVDALEPLVGRVKGGLAVVTVLGCAFFGL
HHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LTGAVAATAAAFSRIMGPEMEKRGYSREYVAAILAASAPLGAFIPPSIPAIIIATSTGTS
HHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHH
VLTMFMVGGAIGIIVMVALIILALATSYIKGYGGVEKRFTIREVFIRVIKALPLLAVPLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VLAGIYLGVFSVTEAGALGALSAFMVAACYRRLTVRKIIDILLESGRSTAVVMLMISTSY
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHH
ILNYTWSLTGINNSMLQFFVNISKTYSPYVSLTVLAIILAILGMFFDVIVLAVAWGATIM
HHHEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAFTPYGISPYHIGALFLFGVLLGTATPPVGAAVFVVSDSLKVKIEEIFKGIIPFVLLYM
HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
VLYIILIFIPETSLWLPRLLGLTT
HHHHHHHHHCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]