| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
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The map label for this gene is thsA [H]
Identifier: 218884344
GI number: 218884344
Start: 979760
End: 981409
Strand: Direct
Name: thsA [H]
Synonym: DKAM_1033
Alternate gene names: 218884344
Gene position: 979760-981409 (Clockwise)
Preceding gene: 218884343
Following gene: 218884345
Centisome position: 71.77
GC content: 47.27
Gene sequence:
>1650_bases ATGGCGCTATATGGCGTACCTGTATTGGTATTGAAGGAGGGAACACGTAGAACCGTTGGTAGAGATGCTCTAAGAGCGAA CATAGCTGCTGCAAGAGCCCTTGCAGAGGTATTGAGAACCAGTCTAGGCCCCAGGGGACTGGATAAAATGCTTGTAGACA GCTTCGGGGATGTCACTGTTACAAACGATGGTGCCACAATAGTTAAGGAGATGGAGGTCCAGCACCCAGCTGCAAAACTA CTCGTGGAGGTCGCTAAGGCCCAGGATGCTGAGGTAGGTGACGGTACAACAAGCGCTGTAGTGCTCGCGGGGACACTTCT AGCCAAGGCTGAGGAGCTTCTCGACCAAAACATCCATCCAAGCATAATAATAGAGGGCTACACCAAGGCCATGAAGGAGG CTTTAAGGCTACTGGACGAGATCAGTGTTAAAGTAAACCCGAGAGATAAAGATATGCTTAGGAGAATAGTTAACACCACT ATCTCAAGCAAGTACATTGGTGGAGACATTATATCGAAGAAGATAGCTGAGATAGCCATAGATGCGGCCCTAGCAGTAGC CGAGCCCAAGCCTGATGGAACATATGATTTCAGAGTCGATGATGTAAAGATAGAGAAAAAGAAGGGTGGAAACGTCCTGG ATACCCAGCTGGTTTACGGCATCGTGTTGGATAAGGAGGTTGTCCACCCGGGCATGCCTAGGAGAGTTGAGAACGCTAGG ATAGCTCTGCTCGATGCTGCATTAGAGATAGAGAAACCAGAAATAACAGCTAAGATCAATATCACCAGTCCCGAGCTAAT AAAAGCCTTCCTCGATAAAGAGGCTGAGATGCTGAAGGAGATGGTTGACAAGATAGCTAGTGTCGGCGCTAACGTGGTTG TATGCCAGAAAGGCATTGATGAGGTTGCCCAGCACTTCCTAGCTAAGAAGGGAATACTGGCTGTAAGGAGGGCTAAGAGG AGCGACCTCGAGAAACTCGAGAGGGCTACAGGCGGCAGAATAGTAAGTAGCGTGAGAGACCTGAAGCCCGAGGACCTCGG ATACGCTGCACTAGTAGAGGAGAGAAGGATAGGTAACGATAAAATGGTATTCATAGAGGGATGCAAGAACCCCAAGGCCG TAACAATACTGGTACGTGGAGCAAGCGACATGGTAATGGATGAGATAGAAAGGAGCCTCAAGGATGCTTTAAACGTGTTG AGAAACATCATGAGGACACCGAAAATAGTGCCAGGTGGCGGTGCTGTAGAGATAGAGTTGGCCATGAAGCTCAGGGAATA CGCTAGCAAAATAGGTGGTAAGGAGCAATTAGCTATAGAAGCATTTGCTTCAGCGCTTGAGGAGATACCATTAATACTTA CCGAAACAAGTGGTAAGGAGCCACTCGACATATTGATGAAGCTAAGACAATTACATAGCGAGGGTAAGAAGTATGCGGGT ATAAATGCTGTAACTGGCGAAATCATTGAAGACATTATTACCAACAACATCATTGAGCCTCTACTAGTTAAGGAATCCAT GATAAAGACTGCAGCCGAGGCTGCCGTGACGATACTGAAGATAGACGATGTCATTGCTGCTAGCCCTGTTAAGAAAGAAA AAGAGGGCAAGAAGGAAGGCGAAGAATCAAAGATGCCGAGTTTTGATTAG
Upstream 100 bases:
>100_bases GGTTCAATGAGATCGATTAAAATAGTTATGATAGAAAAGTTTATATAGAAGTCCTTTCATGAAATACCACTGGATTCTAC CATGATGTAGGTGGAGAGTT
Downstream 100 bases:
>100_bases GTAACCTAAAAATTTATTTTGTACACTTCCTTAACCATAAGAAATAACCTGGTTTAAAATCAACTATCATTAGTTATTGA TTAAATATTGCTCAGCAATG
Product: Thermosome subunit alpha
Products: NA
Alternate protein names: Chaperonin subunit alpha; Thermosome subunit 1 [H]
Number of amino acids: Translated: 549; Mature: 548
Protein sequence:
>549_residues MALYGVPVLVLKEGTRRTVGRDALRANIAAARALAEVLRTSLGPRGLDKMLVDSFGDVTVTNDGATIVKEMEVQHPAAKL LVEVAKAQDAEVGDGTTSAVVLAGTLLAKAEELLDQNIHPSIIIEGYTKAMKEALRLLDEISVKVNPRDKDMLRRIVNTT ISSKYIGGDIISKKIAEIAIDAALAVAEPKPDGTYDFRVDDVKIEKKKGGNVLDTQLVYGIVLDKEVVHPGMPRRVENAR IALLDAALEIEKPEITAKINITSPELIKAFLDKEAEMLKEMVDKIASVGANVVVCQKGIDEVAQHFLAKKGILAVRRAKR SDLEKLERATGGRIVSSVRDLKPEDLGYAALVEERRIGNDKMVFIEGCKNPKAVTILVRGASDMVMDEIERSLKDALNVL RNIMRTPKIVPGGGAVEIELAMKLREYASKIGGKEQLAIEAFASALEEIPLILTETSGKEPLDILMKLRQLHSEGKKYAG INAVTGEIIEDIITNNIIEPLLVKESMIKTAAEAAVTILKIDDVIAASPVKKEKEGKKEGEESKMPSFD
Sequences:
>Translated_549_residues MALYGVPVLVLKEGTRRTVGRDALRANIAAARALAEVLRTSLGPRGLDKMLVDSFGDVTVTNDGATIVKEMEVQHPAAKL LVEVAKAQDAEVGDGTTSAVVLAGTLLAKAEELLDQNIHPSIIIEGYTKAMKEALRLLDEISVKVNPRDKDMLRRIVNTT ISSKYIGGDIISKKIAEIAIDAALAVAEPKPDGTYDFRVDDVKIEKKKGGNVLDTQLVYGIVLDKEVVHPGMPRRVENAR IALLDAALEIEKPEITAKINITSPELIKAFLDKEAEMLKEMVDKIASVGANVVVCQKGIDEVAQHFLAKKGILAVRRAKR SDLEKLERATGGRIVSSVRDLKPEDLGYAALVEERRIGNDKMVFIEGCKNPKAVTILVRGASDMVMDEIERSLKDALNVL RNIMRTPKIVPGGGAVEIELAMKLREYASKIGGKEQLAIEAFASALEEIPLILTETSGKEPLDILMKLRQLHSEGKKYAG INAVTGEIIEDIITNNIIEPLLVKESMIKTAAEAAVTILKIDDVIAASPVKKEKEGKKEGEESKMPSFD >Mature_548_residues ALYGVPVLVLKEGTRRTVGRDALRANIAAARALAEVLRTSLGPRGLDKMLVDSFGDVTVTNDGATIVKEMEVQHPAAKLL VEVAKAQDAEVGDGTTSAVVLAGTLLAKAEELLDQNIHPSIIIEGYTKAMKEALRLLDEISVKVNPRDKDMLRRIVNTTI SSKYIGGDIISKKIAEIAIDAALAVAEPKPDGTYDFRVDDVKIEKKKGGNVLDTQLVYGIVLDKEVVHPGMPRRVENARI ALLDAALEIEKPEITAKINITSPELIKAFLDKEAEMLKEMVDKIASVGANVVVCQKGIDEVAQHFLAKKGILAVRRAKRS DLEKLERATGGRIVSSVRDLKPEDLGYAALVEERRIGNDKMVFIEGCKNPKAVTILVRGASDMVMDEIERSLKDALNVLR NIMRTPKIVPGGGAVEIELAMKLREYASKIGGKEQLAIEAFASALEEIPLILTETSGKEPLDILMKLRQLHSEGKKYAGI NAVTGEIIEDIITNNIIEPLLVKESMIKTAAEAAVTILKIDDVIAASPVKKEKEGKKEGEESKMPSFD
Specific function: Molecular chaperone; binds unfolded polypeptides in vitro, and has a weak ATPase activity [H]
COG id: COG0459
COG function: function code O; Chaperonin GroEL (HSP60 family)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TCP-1 chaperonin family [H]
Homologues:
Organism=Homo sapiens, GI24307939, Length=528, Percent_Identity=43.9393939393939, Blast_Score=410, Evalue=1e-114, Organism=Homo sapiens, GI63162572, Length=537, Percent_Identity=39.6648044692737, Blast_Score=404, Evalue=1e-113, Organism=Homo sapiens, GI57863257, Length=541, Percent_Identity=39.9260628465804, Blast_Score=377, Evalue=1e-104, Organism=Homo sapiens, GI38455427, Length=507, Percent_Identity=40.0394477317554, Blast_Score=361, Evalue=1e-99, Organism=Homo sapiens, GI58761484, Length=537, Percent_Identity=36.4990689013035, Blast_Score=345, Evalue=4e-95, Organism=Homo sapiens, GI5453607, Length=526, Percent_Identity=37.2623574144487, Blast_Score=344, Evalue=2e-94, Organism=Homo sapiens, GI58331173, Length=517, Percent_Identity=36.9439071566731, Blast_Score=313, Evalue=2e-85, Organism=Homo sapiens, GI4502643, Length=516, Percent_Identity=36.4341085271318, Blast_Score=312, Evalue=5e-85, Organism=Homo sapiens, GI261399877, Length=486, Percent_Identity=36.0082304526749, Blast_Score=302, Evalue=6e-82, Organism=Homo sapiens, GI5453603, Length=534, Percent_Identity=35.5805243445693, Blast_Score=278, Evalue=9e-75, Organism=Homo sapiens, GI48762932, Length=544, Percent_Identity=34.5588235294118, Blast_Score=268, Evalue=1e-71, Organism=Homo sapiens, GI302058290, Length=509, Percent_Identity=33.5952848722986, Blast_Score=267, Evalue=2e-71, Organism=Homo sapiens, GI302058292, Length=517, Percent_Identity=32.8820116054159, Blast_Score=250, Evalue=2e-66, Organism=Homo sapiens, GI58331171, Length=516, Percent_Identity=32.3643410852713, Blast_Score=249, Evalue=5e-66, Organism=Homo sapiens, GI261399875, Length=441, Percent_Identity=33.3333333333333, Blast_Score=246, Evalue=5e-65, Organism=Homo sapiens, GI57863259, Length=396, Percent_Identity=35.8585858585859, Blast_Score=236, Evalue=5e-62, Organism=Homo sapiens, GI58331185, Length=317, Percent_Identity=35.0157728706625, Blast_Score=204, Evalue=2e-52, Organism=Homo sapiens, GI7657253, Length=529, Percent_Identity=26.8431001890359, Blast_Score=172, Evalue=6e-43, Organism=Homo sapiens, GI25914754, Length=442, Percent_Identity=21.7194570135747, Blast_Score=79, Evalue=1e-14, Organism=Homo sapiens, GI9055272, Length=442, Percent_Identity=21.7194570135747, Blast_Score=79, Evalue=1e-14, Organism=Homo sapiens, GI121583483, Length=199, Percent_Identity=30.6532663316583, Blast_Score=77, Evalue=4e-14, Organism=Escherichia coli, GI1790586, Length=558, Percent_Identity=23.6559139784946, Blast_Score=73, Evalue=6e-14, Organism=Caenorhabditis elegans, GI25144674, Length=526, Percent_Identity=45.0570342205323, Blast_Score=408, Evalue=1e-114, Organism=Caenorhabditis elegans, GI17532601, Length=540, Percent_Identity=40.3703703703704, Blast_Score=369, Evalue=1e-102, Organism=Caenorhabditis elegans, GI25148561, Length=541, Percent_Identity=36.2292051756007, Blast_Score=353, Evalue=9e-98, Organism=Caenorhabditis elegans, GI17532603, Length=509, Percent_Identity=40.0785854616896, Blast_Score=353, Evalue=2e-97, Organism=Caenorhabditis elegans, GI17564182, Length=524, Percent_Identity=34.7328244274809, Blast_Score=335, Evalue=4e-92, Organism=Caenorhabditis elegans, GI25147750, Length=539, Percent_Identity=35.0649350649351, Blast_Score=300, Evalue=1e-81, Organism=Caenorhabditis elegans, GI25144678, Length=525, Percent_Identity=36.7619047619048, Blast_Score=296, Evalue=2e-80, Organism=Caenorhabditis elegans, GI32566944, Length=446, Percent_Identity=34.0807174887892, Blast_Score=283, Evalue=2e-76, Organism=Caenorhabditis elegans, GI25144680, Length=396, Percent_Identity=38.8888888888889, Blast_Score=258, Evalue=7e-69, Organism=Caenorhabditis elegans, GI71998178, Length=558, Percent_Identity=31.5412186379928, Blast_Score=240, Evalue=1e-63, Organism=Caenorhabditis elegans, GI71981457, Length=327, Percent_Identity=43.1192660550459, Blast_Score=238, Evalue=4e-63, Organism=Caenorhabditis elegans, GI17555558, Length=562, Percent_Identity=21.5302491103203, Blast_Score=68, Evalue=1e-11, Organism=Caenorhabditis elegans, GI212650582, Length=189, Percent_Identity=24.3386243386243, Blast_Score=66, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6322446, Length=536, Percent_Identity=39.365671641791, Blast_Score=400, Evalue=1e-112, Organism=Saccharomyces cerevisiae, GI6320418, Length=537, Percent_Identity=38.3612662942272, Blast_Score=353, Evalue=3e-98, Organism=Saccharomyces cerevisiae, GI6322524, Length=537, Percent_Identity=37.8026070763501, Blast_Score=343, Evalue=4e-95, Organism=Saccharomyces cerevisiae, GI6322350, Length=524, Percent_Identity=36.0687022900763, Blast_Score=332, Evalue=9e-92, Organism=Saccharomyces cerevisiae, GI6320058, Length=509, Percent_Identity=36.3457760314342, Blast_Score=309, Evalue=6e-85, Organism=Saccharomyces cerevisiae, GI6320393, Length=525, Percent_Identity=33.1428571428571, Blast_Score=278, Evalue=2e-75, Organism=Saccharomyces cerevisiae, GI6322049, Length=509, Percent_Identity=35.3634577603143, Blast_Score=270, Evalue=3e-73, Organism=Saccharomyces cerevisiae, GI6322452, Length=519, Percent_Identity=31.9845857418112, Blast_Score=245, Evalue=1e-65, Organism=Drosophila melanogaster, GI17647245, Length=531, Percent_Identity=41.9962335216573, Blast_Score=387, Evalue=1e-107, Organism=Drosophila melanogaster, GI24652903, Length=506, Percent_Identity=42.2924901185771, Blast_Score=370, Evalue=1e-102, Organism=Drosophila melanogaster, GI24649027, Length=551, Percent_Identity=37.5680580762251, Blast_Score=368, Evalue=1e-102, Organism=Drosophila melanogaster, GI24649029, Length=551, Percent_Identity=37.5680580762251, Blast_Score=368, Evalue=1e-102, Organism=Drosophila melanogaster, GI24647512, Length=553, Percent_Identity=38.1555153707052, Blast_Score=363, Evalue=1e-100, Organism=Drosophila melanogaster, GI24647510, Length=553, Percent_Identity=38.1555153707052, Blast_Score=363, Evalue=1e-100, Organism=Drosophila melanogaster, GI24645179, Length=527, Percent_Identity=37.0018975332068, Blast_Score=348, Evalue=7e-96, Organism=Drosophila melanogaster, GI24583944, Length=510, Percent_Identity=37.843137254902, Blast_Score=337, Evalue=9e-93, Organism=Drosophila melanogaster, GI18859933, Length=514, Percent_Identity=35.0194552529183, Blast_Score=295, Evalue=6e-80, Organism=Drosophila melanogaster, GI28571140, Length=535, Percent_Identity=34.392523364486, Blast_Score=279, Evalue=3e-75, Organism=Drosophila melanogaster, GI18858175, Length=535, Percent_Identity=34.392523364486, Blast_Score=279, Evalue=4e-75, Organism=Drosophila melanogaster, GI19921848, Length=530, Percent_Identity=35.0943396226415, Blast_Score=263, Evalue=2e-70, Organism=Drosophila melanogaster, GI20130093, Length=191, Percent_Identity=30.3664921465969, Blast_Score=76, Evalue=5e-14, Organism=Drosophila melanogaster, GI45552711, Length=191, Percent_Identity=30.3664921465969, Blast_Score=76, Evalue=5e-14, Organism=Drosophila melanogaster, GI45550936, Length=536, Percent_Identity=23.5074626865672, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI45550132, Length=536, Percent_Identity=23.5074626865672, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI45550935, Length=536, Percent_Identity=23.5074626865672, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24641193, Length=548, Percent_Identity=22.0802919708029, Blast_Score=67, Evalue=4e-11, Organism=Drosophila melanogaster, GI24641191, Length=548, Percent_Identity=22.0802919708029, Blast_Score=67, Evalue=4e-11,
Paralogues:
None
Copy number: 2180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 360 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 480 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 15012 Molecules/Cell In: Growth Phase,
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017998 - InterPro: IPR002194 - InterPro: IPR002423 - InterPro: IPR012714 [H]
Pfam domain/function: PF00118 Cpn60_TCP1 [H]
EC number: NA
Molecular weight: Translated: 59664; Mature: 59533
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: PS00750 TCP1_1 ; PS00751 TCP1_2 ; PS00995 TCP1_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALYGVPVLVLKEGTRRTVGRDALRANIAAARALAEVLRTSLGPRGLDKMLVDSFGDVTV CCEECCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEE TNDGATIVKEMEVQHPAAKLLVEVAKAQDAEVGDGTTSAVVLAGTLLAKAEELLDQNIHP ECCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC SIIIEGYTKAMKEALRLLDEISVKVNPRDKDMLRRIVNTTISSKYIGGDIISKKIAEIAI CEEEHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH DAALAVAEPKPDGTYDFRVDDVKIEKKKGGNVLDTQLVYGIVLDKEVVHPGMPRRVENAR HHHHEECCCCCCCCEEEEECCEEEECCCCCCEEHHHHHHHHHCCHHHHCCCCCCCCCCCC IALLDAALEIEKPEITAKINITSPELIKAFLDKEAEMLKEMVDKIASVGANVVVCQKGID EEEEEHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHH EVAQHFLAKKGILAVRRAKRSDLEKLERATGGRIVSSVRDLKPEDLGYAALVEERRIGND HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCC KMVFIEGCKNPKAVTILVRGASDMVMDEIERSLKDALNVLRNIMRTPKIVPGGGAVEIEL CEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHH AMKLREYASKIGGKEQLAIEAFASALEEIPLILTETSGKEPLDILMKLRQLHSEGKKYAG HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCC INAVTGEIIEDIITNNIIEPLLVKESMIKTAAEAAVTILKIDDVIAASPVKKEKEGKKEG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCHHHCCCCCHHHHHHCCC EESKMPSFD CCCCCCCCC >Mature Secondary Structure ALYGVPVLVLKEGTRRTVGRDALRANIAAARALAEVLRTSLGPRGLDKMLVDSFGDVTV CEECCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEE TNDGATIVKEMEVQHPAAKLLVEVAKAQDAEVGDGTTSAVVLAGTLLAKAEELLDQNIHP ECCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC SIIIEGYTKAMKEALRLLDEISVKVNPRDKDMLRRIVNTTISSKYIGGDIISKKIAEIAI CEEEHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH DAALAVAEPKPDGTYDFRVDDVKIEKKKGGNVLDTQLVYGIVLDKEVVHPGMPRRVENAR HHHHEECCCCCCCCEEEEECCEEEECCCCCCEEHHHHHHHHHCCHHHHCCCCCCCCCCCC IALLDAALEIEKPEITAKINITSPELIKAFLDKEAEMLKEMVDKIASVGANVVVCQKGID EEEEEHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHH EVAQHFLAKKGILAVRRAKRSDLEKLERATGGRIVSSVRDLKPEDLGYAALVEERRIGND HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCC KMVFIEGCKNPKAVTILVRGASDMVMDEIERSLKDALNVLRNIMRTPKIVPGGGAVEIEL CEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHH AMKLREYASKIGGKEQLAIEAFASALEEIPLILTETSGKEPLDILMKLRQLHSEGKKYAG HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCC INAVTGEIIEDIITNNIIEPLLVKESMIKTAAEAAVTILKIDDVIAASPVKKEKEGKKEG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCHHHCCCCCHHHHHHCCC EESKMPSFD CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10382966 [H]