| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
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The map label for this gene is hypF [H]
Identifier: 218883731
GI number: 218883731
Start: 391398
End: 393695
Strand: Reverse
Name: hypF [H]
Synonym: DKAM_0420
Alternate gene names: 218883731
Gene position: 393695-391398 (Counterclockwise)
Preceding gene: 218883732
Following gene: 218883730
Centisome position: 28.84
GC content: 46.91
Gene sequence:
>2298_bases ATGAAAGCGTTAAGAATAGTGGTTACAGGGCTAGTCCAAGGAGTTGGCTTCAGGCCATTCATAGATAGGGTTGTTAGGCA GATGAAGCTGAATGGTTATGTGAGGAATGTCGGTGGGAGCGAGGTCGAGGTATGGATTGAGGGCAATGAAGAATACTTGT ATGAATTTCTAGCTGCCTTGTTATACGAGAAGCCGCCTCCAGCATTGATCGATGATGTTGTTTTCGAGGAGGAGATCCCA GTAGGTTACACGGGGTTCACGATTCTAAAGAGTAGTGAAGCAAGGATTCTTAGGTCGAATATACCGCCCGATCTTGCTGT ATGCAGACACTGCCTCGAAGAAGTACTAGACCCCTTGAACAGGAGGTACATGTATCCCTTTAACTCGTGCGCCTGGTGCG GTCCCAGGTTCTCGATGATGCATAGGTCGCCGTATGATAGGGAGAATACAAGTATGTCCAAGTACATGCTCTGTGATGAA TGCCTAAGGGAATACAATGACCCAGAGAATGTAAGGAGACATCATGCCCAGGGAATAAGTTGCCCTAGGGACGGCCCCAG GCTCGCTCTCTACGATAATGATTTCACCCCTATTAATACACGGGACCCTATTAAAGAGGCGGCTCAATTAATTGATGAAG GGTATATAGTGGCTGTTAAAGGCATAGGAGGGTATCATATAGCATCGCTCGCTACAGATGACGAGGTGGTTCATAGATTA AGGACTAGGAAAAAGAGGCCTAGGAAACCGTTTGCAGTAATGGGGCTTGACACTAGTATTCTAGAACTACTTGTCTACAT GGATGAGAGGGATAGGGAGATACTTGAGTCGCCGAGGGCGCCAATACTGCTTCTGCCTAAACACGAGGATTCACCGGTGT CAAGGCTCGTCTCACCTGGTTTAAGCCATGAAGGAGTCTTCATAGCTTATACGCCCCTGCACTTTCTACTATTGATGAAC ACCAAGGATAAATTCCTTATAATGACCAGCGGCAATGTATCAGGGGAACCCATGTGCCGTGATGAGGAATGCGCTAAAAA CAGGTTGACCAGTATAGTGGATTATTTCCTCGTGCATGACCGTGATATCGTGAATAGGGTTGATGACAGTGTTATACGTA AAACAGGCGGCGAGTACGTTTTACTTAGAAGATCTAGGGGTTATGCCCCCTCATGGATCAAGATACCTGTTGAACTACAG CGTGAAGTAATAGCTTTCGGTGGAGATCTTAACAATGTTGGTGGAATAGGCTTTGAAGACAAGATTGTTTTAACACAGTA TATTGGGGATCTTGAGAGCTATAATGCACAGGTCGATCTAGTAAACACTATAGAATACCTGGTGAGAAACTACGGGGTTG ACTCAGAGAAGGCTCTCATAGCTGTTGATAAACACCCTTCATACCACTCTAGAAGGCTTGGTATAGAGTATTCCAGGAGG CATGGTGCCGGGATAATCGAGATCCAACACCACTATGCACACGTCTTTGGCGTGGCTGTCGATAGAGGTTTAAGCGGGGT GGTTGCCGGGCTGGCAATAGATGGTGTTGGATGGGGCGACGATTCAACGATATGGGGTGGAGAGGTATTAGTGTTCGACA TGGATAAACCCGGTGTATATAGGAGGGTCGCATCCATAGATTACATCCCATTAACCAGTGATAGAGACACCGTTAAACCA TTCAGGCTCCTCTACGGATACCTCGCTAAAAAAGGATGGGATATAGGGGAAATAGACAGGGTTCTAGGGCTAAGGGATGG CAACCGTATATTAGAGGGGCACATGGTATACAACATGGTGAAGCGGGGCAGGTACACCCCGGCTTCCAGCACCGGGCGTC TCATCGATATAGTGGCCTCTATAATAGACCCTGGCATTGAGAGGAGCTTTGAAGGGGAGCCAGCTATAAGGCTTGAAGCC ATGGCATTCAATGGCGTACCAAAACTACTGGAGGACGTTAGGTTCCAAATAGATGGCAACCTGGTGAGGCTGGATGTATA TGGCGTTATATCCAGGATCCTTGAGGAAAGGAGCTCTATGAAACCATGTGACCTAGCTGCATCCTTCCTATATAGCATTG GCTACTATTACGGGGAGCTCATAGCAGCATCTATTAAGGGCTCCAGTGTCTCCAACATAGTTGTCTCTGGTGGAGCATCT GTAAACGAGTATATTTACAGGGGTCTACGTGATAGGCTTGCTTCAGAGGGCTTGAAGCCTTTACTACCATTAAATATACC GCCTAATGATGAGGGAATAGCCTTCGGGCAGGTGATCGTAGCTGGTTTAATTAGGTAA
Upstream 100 bases:
>100_bases TGTAGCCATAAGCAAGATCAGCAGAGAGGAGGCGGAGGAAACACTCAGGCTCCTTGCGGAGATCAGTGGCATCTAGAACA CCGTGAAACCGGGGTCTTGG
Downstream 100 bases:
>100_bases ACCTACCGCTTGATTTATTTATCCTAGTTAATGAATCCTATAACCATGGCGAGGGTGCTTACGCCTTGGATAATGAGGTT GTAGAGGGGAAAACTACTAG
Product: (NiFe) hydrogenase maturation protein HypF
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF; [NiFe]-hydrogenase maturation factor hypF; Hydrogenase maturation protein hypF [H]
Number of amino acids: Translated: 765; Mature: 765
Protein sequence:
>765_residues MKALRIVVTGLVQGVGFRPFIDRVVRQMKLNGYVRNVGGSEVEVWIEGNEEYLYEFLAALLYEKPPPALIDDVVFEEEIP VGYTGFTILKSSEARILRSNIPPDLAVCRHCLEEVLDPLNRRYMYPFNSCAWCGPRFSMMHRSPYDRENTSMSKYMLCDE CLREYNDPENVRRHHAQGISCPRDGPRLALYDNDFTPINTRDPIKEAAQLIDEGYIVAVKGIGGYHIASLATDDEVVHRL RTRKKRPRKPFAVMGLDTSILELLVYMDERDREILESPRAPILLLPKHEDSPVSRLVSPGLSHEGVFIAYTPLHFLLLMN TKDKFLIMTSGNVSGEPMCRDEECAKNRLTSIVDYFLVHDRDIVNRVDDSVIRKTGGEYVLLRRSRGYAPSWIKIPVELQ REVIAFGGDLNNVGGIGFEDKIVLTQYIGDLESYNAQVDLVNTIEYLVRNYGVDSEKALIAVDKHPSYHSRRLGIEYSRR HGAGIIEIQHHYAHVFGVAVDRGLSGVVAGLAIDGVGWGDDSTIWGGEVLVFDMDKPGVYRRVASIDYIPLTSDRDTVKP FRLLYGYLAKKGWDIGEIDRVLGLRDGNRILEGHMVYNMVKRGRYTPASSTGRLIDIVASIIDPGIERSFEGEPAIRLEA MAFNGVPKLLEDVRFQIDGNLVRLDVYGVISRILEERSSMKPCDLAASFLYSIGYYYGELIAASIKGSSVSNIVVSGGAS VNEYIYRGLRDRLASEGLKPLLPLNIPPNDEGIAFGQVIVAGLIR
Sequences:
>Translated_765_residues MKALRIVVTGLVQGVGFRPFIDRVVRQMKLNGYVRNVGGSEVEVWIEGNEEYLYEFLAALLYEKPPPALIDDVVFEEEIP VGYTGFTILKSSEARILRSNIPPDLAVCRHCLEEVLDPLNRRYMYPFNSCAWCGPRFSMMHRSPYDRENTSMSKYMLCDE CLREYNDPENVRRHHAQGISCPRDGPRLALYDNDFTPINTRDPIKEAAQLIDEGYIVAVKGIGGYHIASLATDDEVVHRL RTRKKRPRKPFAVMGLDTSILELLVYMDERDREILESPRAPILLLPKHEDSPVSRLVSPGLSHEGVFIAYTPLHFLLLMN TKDKFLIMTSGNVSGEPMCRDEECAKNRLTSIVDYFLVHDRDIVNRVDDSVIRKTGGEYVLLRRSRGYAPSWIKIPVELQ REVIAFGGDLNNVGGIGFEDKIVLTQYIGDLESYNAQVDLVNTIEYLVRNYGVDSEKALIAVDKHPSYHSRRLGIEYSRR HGAGIIEIQHHYAHVFGVAVDRGLSGVVAGLAIDGVGWGDDSTIWGGEVLVFDMDKPGVYRRVASIDYIPLTSDRDTVKP FRLLYGYLAKKGWDIGEIDRVLGLRDGNRILEGHMVYNMVKRGRYTPASSTGRLIDIVASIIDPGIERSFEGEPAIRLEA MAFNGVPKLLEDVRFQIDGNLVRLDVYGVISRILEERSSMKPCDLAASFLYSIGYYYGELIAASIKGSSVSNIVVSGGAS VNEYIYRGLRDRLASEGLKPLLPLNIPPNDEGIAFGQVIVAGLIR >Mature_765_residues MKALRIVVTGLVQGVGFRPFIDRVVRQMKLNGYVRNVGGSEVEVWIEGNEEYLYEFLAALLYEKPPPALIDDVVFEEEIP VGYTGFTILKSSEARILRSNIPPDLAVCRHCLEEVLDPLNRRYMYPFNSCAWCGPRFSMMHRSPYDRENTSMSKYMLCDE CLREYNDPENVRRHHAQGISCPRDGPRLALYDNDFTPINTRDPIKEAAQLIDEGYIVAVKGIGGYHIASLATDDEVVHRL RTRKKRPRKPFAVMGLDTSILELLVYMDERDREILESPRAPILLLPKHEDSPVSRLVSPGLSHEGVFIAYTPLHFLLLMN TKDKFLIMTSGNVSGEPMCRDEECAKNRLTSIVDYFLVHDRDIVNRVDDSVIRKTGGEYVLLRRSRGYAPSWIKIPVELQ REVIAFGGDLNNVGGIGFEDKIVLTQYIGDLESYNAQVDLVNTIEYLVRNYGVDSEKALIAVDKHPSYHSRRLGIEYSRR HGAGIIEIQHHYAHVFGVAVDRGLSGVVAGLAIDGVGWGDDSTIWGGEVLVFDMDKPGVYRRVASIDYIPLTSDRDTVKP FRLLYGYLAKKGWDIGEIDRVLGLRDGNRILEGHMVYNMVKRGRYTPASSTGRLIDIVASIIDPGIERSFEGEPAIRLEA MAFNGVPKLLEDVRFQIDGNLVRLDVYGVISRILEERSSMKPCDLAASFLYSIGYYYGELIAASIKGSSVSNIVVSGGAS VNEYIYRGLRDRLASEGLKPLLPLNIPPNDEGIAFGQVIVAGLIR
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=776, Percent_Identity=31.4432989690722, Blast_Score=294, Evalue=2e-80,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 85904; Mature: 85904
Theoretical pI: Translated: 6.10; Mature: 6.10
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKALRIVVTGLVQGVGFRPFIDRVVRQMKLNGYVRNVGGSEVEVWIEGNEEYLYEFLAAL CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEECCCCCEEEEEEECCHHHHHHHHHHH LYEKPPPALIDDVVFEEEIPVGYTGFTILKSSEARILRSNIPPDLAVCRHCLEEVLDPLN HHCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHCCCCCHHHHHHHHHHHHHHHHH RRYMYPFNSCAWCGPRFSMMHRSPYDRENTSMSKYMLCDECLREYNDPENVRRHHAQGIS CCEECCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCC CPRDGPRLALYDNDFTPINTRDPIKEAAQLIDEGYIVAVKGIGGYHIASLATDDEVVHRL CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCEEEEECCCCHHHHHHH RTRKKRPRKPFAVMGLDTSILELLVYMDERDREILESPRAPILLLPKHEDSPVSRLVSPG HHHHCCCCCCEEEECCCHHHHHHHHHHCCCCHHHHHCCCCCEEEEECCCCCHHHHHHCCC LSHEGVFIAYTPLHFLLLMNTKDKFLIMTSGNVSGEPMCRDEECAKNRLTSIVDYFLVHD CCCCCEEEEECCEEEEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC RDIVNRVDDSVIRKTGGEYVLLRRSRGYAPSWIKIPVELQREVIAFGGDLNNVGGIGFED HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECHHHHHHHHHCCCCCCCCCCCCCCC KIVLTQYIGDLESYNAQVDLVNTIEYLVRNYGVDSEKALIAVDKHPSYHSRRLGIEYSRR CCHHHHHHCCHHHCCCEEEHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEHHC HGAGIIEIQHHYAHVFGVAVDRGLSGVVAGLAIDGVGWGDDSTIWGGEVLVFDMDKPGVY CCCCEEEEEHHHHHHHHHHHHCCHHHHHHHHEEECCCCCCCCCEECCEEEEEECCCCCHH RRVASIDYIPLTSDRDTVKPFRLLYGYLAKKGWDIGEIDRVLGLRDGNRILEGHMVYNMV HHHHCCCEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH KRGRYTPASSTGRLIDIVASIIDPGIERSFEGEPAIRLEAMAFNGVPKLLEDVRFQIDGN HCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHEEECCC LVRLDVYGVISRILEERSSMKPCDLAASFLYSIGYYYGELIAASIKGSSVSNIVVSGGAS EEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC VNEYIYRGLRDRLASEGLKPLLPLNIPPNDEGIAFGQVIVAGLIR HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC >Mature Secondary Structure MKALRIVVTGLVQGVGFRPFIDRVVRQMKLNGYVRNVGGSEVEVWIEGNEEYLYEFLAAL CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEECCCCCEEEEEEECCHHHHHHHHHHH LYEKPPPALIDDVVFEEEIPVGYTGFTILKSSEARILRSNIPPDLAVCRHCLEEVLDPLN HHCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHCCCCCHHHHHHHHHHHHHHHHH RRYMYPFNSCAWCGPRFSMMHRSPYDRENTSMSKYMLCDECLREYNDPENVRRHHAQGIS CCEECCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCC CPRDGPRLALYDNDFTPINTRDPIKEAAQLIDEGYIVAVKGIGGYHIASLATDDEVVHRL CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCEEEEECCCCHHHHHHH RTRKKRPRKPFAVMGLDTSILELLVYMDERDREILESPRAPILLLPKHEDSPVSRLVSPG HHHHCCCCCCEEEECCCHHHHHHHHHHCCCCHHHHHCCCCCEEEEECCCCCHHHHHHCCC LSHEGVFIAYTPLHFLLLMNTKDKFLIMTSGNVSGEPMCRDEECAKNRLTSIVDYFLVHD CCCCCEEEEECCEEEEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC RDIVNRVDDSVIRKTGGEYVLLRRSRGYAPSWIKIPVELQREVIAFGGDLNNVGGIGFED HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECHHHHHHHHHCCCCCCCCCCCCCCC KIVLTQYIGDLESYNAQVDLVNTIEYLVRNYGVDSEKALIAVDKHPSYHSRRLGIEYSRR CCHHHHHHCCHHHCCCEEEHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEHHC HGAGIIEIQHHYAHVFGVAVDRGLSGVVAGLAIDGVGWGDDSTIWGGEVLVFDMDKPGVY CCCCEEEEEHHHHHHHHHHHHCCHHHHHHHHEEECCCCCCCCCEECCEEEEEECCCCCHH RRVASIDYIPLTSDRDTVKPFRLLYGYLAKKGWDIGEIDRVLGLRDGNRILEGHMVYNMV HHHHCCCEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH KRGRYTPASSTGRLIDIVASIIDPGIERSFEGEPAIRLEAMAFNGVPKLLEDVRFQIDGN HCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHEEECCC LVRLDVYGVISRILEERSSMKPCDLAASFLYSIGYYYGELIAASIKGSSVSNIVVSGGAS EEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC VNEYIYRGLRDRLASEGLKPLLPLNIPPNDEGIAFGQVIVAGLIR HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]