| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
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The map label for this gene is appD [H]
Identifier: 218883545
GI number: 218883545
Start: 217221
End: 218195
Strand: Direct
Name: appD [H]
Synonym: DKAM_0234
Alternate gene names: 218883545
Gene position: 217221-218195 (Clockwise)
Preceding gene: 218883544
Following gene: 218883546
Centisome position: 15.91
GC content: 47.79
Gene sequence:
>975_bases GTGGAGGCTGTGGTTCTAGCCGTTAAAGCAGTGGACTTGAAGATAGGTTATATGGATGAGGAGGAAAAGATTTACTGGGC TGTTAGAGGCGTTAGCTTCCAGGTGAGTGAGAGCGAGATATACTGTATTGTCGGGGAAAGCGGTTGCGGTAAATCAACGA TCGGTAACGCTATTGCCGGGATTTTACCTTCACATGCTGTGACAAGGGGTAAGCTCTATATATATGATAAAAAGGTGATC GACAACGAGAAAATGGATTACACCGGGATACGAGGCAGGATTGTCTCATATATACCACAGAACCCCGGGACAAGCTTGAA CCCTTATGAGACCATAGAGGAACAGTTCTACCACGTGTTGAGTAGTGTATACGGCTATGATAAGAGGAAGTCTGTTGAGA CAGCCAGAAGATATCTCGCAATGGTTGAACTGGATCCCGATAAAGTACTCGATTACTACCCACATGAGCTCAGTGGAGGC ATGCAGCAGAGGGCTGCGATAAGTATAGCGCTGGCTACAGGGGCGCGGATAATCGTCGCTGATGAGCCAACCTCCTCATT GGATGCTCACCTCAGGTTGCAATTGATTAGGTTAATGAGGAAGCTGAGGGATACTGTGAGGTTATCCCTAATACTGATAA CACATGATCTCGTCTCAGCTGGACGGATATGTGACACCATAGCAGTAATGTATGCTGGTAAAATAGTTGAGGAGGGAAGA GGGAGCCTGCTTCTAACCGAGCCTCTCCACCCATATACTCAAATGCTTGTAGACGCGGTTCCAATCCTGGGGTTGAAAAA GCCGTTGAAGAGTATTCCAGGTGAACCACCCCAAGTCGGAGGCGAGATATCGTGGTGTGTGTTTCGTGAGAGATGCCCTG TTGCATTCGAGAAATGTGGTATCCACCCTCCCGAGCTATATATAATGGAGAGGAAGGTCTCATGCTGGAGGTACATGAAT CATGGTGCCAGGTGA
Upstream 100 bases:
>100_bases TAACCATGTTCCCCGGCATCTTTCTATTGATCACTGCTCTCGGATTCAGCTTAATAGGTGATAGCCTAAGAGAGGAACTG GATCCACGGATGAGGAGGAG
Downstream 100 bases:
>100_bases TATCATTAGACTGGAGGATGTCACAGCTGGATATGTTGTTATTAAACAAGGCATTAAGAGCATAGCACGAGAGAAGATGG TGGTGTTGAGAAACATTAAT
Product: oligopeptide/dipeptide ABC transporter ATPase
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 324; Mature: 324
Protein sequence:
>324_residues MEAVVLAVKAVDLKIGYMDEEEKIYWAVRGVSFQVSESEIYCIVGESGCGKSTIGNAIAGILPSHAVTRGKLYIYDKKVI DNEKMDYTGIRGRIVSYIPQNPGTSLNPYETIEEQFYHVLSSVYGYDKRKSVETARRYLAMVELDPDKVLDYYPHELSGG MQQRAAISIALATGARIIVADEPTSSLDAHLRLQLIRLMRKLRDTVRLSLILITHDLVSAGRICDTIAVMYAGKIVEEGR GSLLLTEPLHPYTQMLVDAVPILGLKKPLKSIPGEPPQVGGEISWCVFRERCPVAFEKCGIHPPELYIMERKVSCWRYMN HGAR
Sequences:
>Translated_324_residues MEAVVLAVKAVDLKIGYMDEEEKIYWAVRGVSFQVSESEIYCIVGESGCGKSTIGNAIAGILPSHAVTRGKLYIYDKKVI DNEKMDYTGIRGRIVSYIPQNPGTSLNPYETIEEQFYHVLSSVYGYDKRKSVETARRYLAMVELDPDKVLDYYPHELSGG MQQRAAISIALATGARIIVADEPTSSLDAHLRLQLIRLMRKLRDTVRLSLILITHDLVSAGRICDTIAVMYAGKIVEEGR GSLLLTEPLHPYTQMLVDAVPILGLKKPLKSIPGEPPQVGGEISWCVFRERCPVAFEKCGIHPPELYIMERKVSCWRYMN HGAR >Mature_324_residues MEAVVLAVKAVDLKIGYMDEEEKIYWAVRGVSFQVSESEIYCIVGESGCGKSTIGNAIAGILPSHAVTRGKLYIYDKKVI DNEKMDYTGIRGRIVSYIPQNPGTSLNPYETIEEQFYHVLSSVYGYDKRKSVETARRYLAMVELDPDKVLDYYPHELSGG MQQRAAISIALATGARIIVADEPTSSLDAHLRLQLIRLMRKLRDTVRLSLILITHDLVSAGRICDTIAVMYAGKIVEEGR GSLLLTEPLHPYTQMLVDAVPILGLKKPLKSIPGEPPQVGGEISWCVFRERCPVAFEKCGIHPPELYIMERKVSCWRYMN HGAR
Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI116734710, Length=209, Percent_Identity=29.1866028708134, Blast_Score=79, Evalue=8e-15, Organism=Homo sapiens, GI21536376, Length=225, Percent_Identity=28.8888888888889, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI27262624, Length=213, Percent_Identity=27.6995305164319, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI27262626, Length=213, Percent_Identity=27.6995305164319, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI9961250, Length=226, Percent_Identity=30.5309734513274, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI153792144, Length=218, Percent_Identity=26.1467889908257, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI9961252, Length=224, Percent_Identity=30.8035714285714, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI4505771, Length=224, Percent_Identity=30.8035714285714, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI27436953, Length=240, Percent_Identity=27.0833333333333, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI11967971, Length=218, Percent_Identity=24.7706422018349, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI47078218, Length=226, Percent_Identity=26.5486725663717, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI45446740, Length=226, Percent_Identity=26.5486725663717, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI105990541, Length=217, Percent_Identity=28.110599078341, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI27881501, Length=210, Percent_Identity=26.1904761904762, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI30795238, Length=210, Percent_Identity=26.1904761904762, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI150417984, Length=218, Percent_Identity=25.6880733944954, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI48994883, Length=309, Percent_Identity=34.6278317152104, Blast_Score=192, Evalue=2e-50, Organism=Escherichia coli, GI1789963, Length=325, Percent_Identity=34.1538461538462, Blast_Score=174, Evalue=8e-45, Organism=Escherichia coli, GI1787500, Length=320, Percent_Identity=35.9375, Blast_Score=169, Evalue=2e-43, Organism=Escherichia coli, GI1787759, Length=297, Percent_Identity=33.6700336700337, Blast_Score=168, Evalue=4e-43, Organism=Escherichia coli, GI1789962, Length=306, Percent_Identity=33.6601307189542, Blast_Score=158, Evalue=5e-40, Organism=Escherichia coli, GI1787758, Length=309, Percent_Identity=35.5987055016181, Blast_Score=158, Evalue=5e-40, Organism=Escherichia coli, GI145693107, Length=277, Percent_Identity=35.3790613718412, Blast_Score=157, Evalue=8e-40, Organism=Escherichia coli, GI1788506, Length=264, Percent_Identity=33.7121212121212, Blast_Score=155, Evalue=3e-39, Organism=Escherichia coli, GI1787548, Length=313, Percent_Identity=31.9488817891374, Blast_Score=149, Evalue=2e-37, Organism=Escherichia coli, GI1787547, Length=235, Percent_Identity=36.1702127659575, Blast_Score=124, Evalue=6e-30, Organism=Escherichia coli, GI1789890, Length=233, Percent_Identity=32.618025751073, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI48994997, Length=234, Percent_Identity=32.9059829059829, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1788225, Length=231, Percent_Identity=31.6017316017316, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1789891, Length=222, Percent_Identity=29.2792792792793, Blast_Score=104, Evalue=9e-24, Organism=Escherichia coli, GI87082267, Length=206, Percent_Identity=31.5533980582524, Blast_Score=101, Evalue=8e-23, Organism=Escherichia coli, GI1787029, Length=221, Percent_Identity=30.7692307692308, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1789032, Length=245, Percent_Identity=28.1632653061224, Blast_Score=98, Evalue=8e-22, Organism=Escherichia coli, GI1786398, Length=250, Percent_Identity=27.6, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1790467, Length=212, Percent_Identity=30.6603773584906, Blast_Score=93, Evalue=3e-20, Organism=Escherichia coli, GI1787370, Length=225, Percent_Identity=29.3333333333333, Blast_Score=92, Evalue=6e-20, Organism=Escherichia coli, GI87081709, Length=221, Percent_Identity=27.6018099547511, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787712, Length=243, Percent_Identity=29.2181069958848, Blast_Score=88, Evalue=9e-19, Organism=Escherichia coli, GI1786319, Length=249, Percent_Identity=28.5140562248996, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1790739, Length=236, Percent_Identity=27.5423728813559, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1787089, Length=227, Percent_Identity=27.7533039647577, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI87081791, Length=238, Percent_Identity=27.7310924369748, Blast_Score=85, Evalue=8e-18, Organism=Escherichia coli, GI1786872, Length=204, Percent_Identity=30.3921568627451, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI48994943, Length=267, Percent_Identity=27.3408239700375, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1788761, Length=221, Percent_Identity=27.6018099547511, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1788644, Length=256, Percent_Identity=30.46875, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787105, Length=205, Percent_Identity=31.7073170731707, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI87081834, Length=221, Percent_Identity=28.5067873303167, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1786563, Length=207, Percent_Identity=28.5024154589372, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786703, Length=213, Percent_Identity=30.0469483568075, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1788450, Length=230, Percent_Identity=24.3478260869565, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1790162, Length=234, Percent_Identity=23.9316239316239, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1786345, Length=235, Percent_Identity=25.531914893617, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786253, Length=221, Percent_Identity=27.6018099547511, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1789873, Length=201, Percent_Identity=27.8606965174129, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI48995001, Length=215, Percent_Identity=30.2325581395349, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1788210, Length=223, Percent_Identity=30.0448430493274, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1786803, Length=256, Percent_Identity=25, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI1787792, Length=259, Percent_Identity=26.6409266409266, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1790525, Length=219, Percent_Identity=31.0502283105023, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1787112, Length=240, Percent_Identity=27.9166666666667, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI1789672, Length=236, Percent_Identity=24.5762711864407, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787113, Length=213, Percent_Identity=26.7605633802817, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1790544, Length=224, Percent_Identity=23.6607142857143, Blast_Score=62, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71996809, Length=222, Percent_Identity=28.8288288288288, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17510237, Length=246, Percent_Identity=26.8292682926829, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71983516, Length=225, Percent_Identity=29.7777777777778, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71983523, Length=225, Percent_Identity=29.7777777777778, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71983510, Length=225, Percent_Identity=29.7777777777778, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI25146777, Length=228, Percent_Identity=29.8245614035088, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17565586, Length=229, Percent_Identity=26.6375545851528, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI212646699, Length=221, Percent_Identity=29.8642533936652, Blast_Score=65, Evalue=7e-11, Organism=Drosophila melanogaster, GI24650853, Length=219, Percent_Identity=26.027397260274, Blast_Score=75, Evalue=7e-14, Organism=Drosophila melanogaster, GI24648314, Length=226, Percent_Identity=27.8761061946903, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI24650855, Length=219, Percent_Identity=26.027397260274, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI24643674, Length=220, Percent_Identity=28.6363636363636, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI281362751, Length=219, Percent_Identity=26.4840182648402, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI221512771, Length=217, Percent_Identity=28.110599078341, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI116007184, Length=233, Percent_Identity=28.3261802575107, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI116007328, Length=212, Percent_Identity=25.9433962264151, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI221500365, Length=233, Percent_Identity=28.3261802575107, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI28574150, Length=212, Percent_Identity=25.9433962264151, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI24666092, Length=208, Percent_Identity=24.5192307692308, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI28574533, Length=250, Percent_Identity=25.2, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 36266; Mature: 36266
Theoretical pI: Translated: 7.49; Mature: 7.49
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEAVVLAVKAVDLKIGYMDEEEKIYWAVRGVSFQVSESEIYCIVGESGCGKSTIGNAIAG CCEEEEEEEEEEEEEECCCCCCEEEEEEECCEEEEECCEEEEEECCCCCCCHHHHHHHHH ILPSHAVTRGKLYIYDKKVIDNEKMDYTGIRGRIVSYIPQNPGTSLNPYETIEEQFYHVL HCCCCCEECCEEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHH SSVYGYDKRKSVETARRYLAMVELDPDKVLDYYPHELSGGMQQRAAISIALATGARIIVA HHHHCCCCHHHHHHHHHEEEEEEECHHHHHHCCCHHHCCCHHHHHEEEEEEECCCEEEEE DEPTSSLDAHLRLQLIRLMRKLRDTVRLSLILITHDLVSAGRICDTIAVMYAGKIVEEGR CCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCC GSLLLTEPLHPYTQMLVDAVPILGLKKPLKSIPGEPPQVGGEISWCVFRERCPVAFEKCG CCEEEECCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHCC IHPPELYIMERKVSCWRYMNHGAR CCCCCEEEEHHHHHHHHHHHCCCC >Mature Secondary Structure MEAVVLAVKAVDLKIGYMDEEEKIYWAVRGVSFQVSESEIYCIVGESGCGKSTIGNAIAG CCEEEEEEEEEEEEEECCCCCCEEEEEEECCEEEEECCEEEEEECCCCCCCHHHHHHHHH ILPSHAVTRGKLYIYDKKVIDNEKMDYTGIRGRIVSYIPQNPGTSLNPYETIEEQFYHVL HCCCCCEECCEEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHH SSVYGYDKRKSVETARRYLAMVELDPDKVLDYYPHELSGGMQQRAAISIALATGARIIVA HHHHCCCCHHHHHHHHHEEEEEEECHHHHHHCCCHHHCCCHHHHHEEEEEEECCCEEEEE DEPTSSLDAHLRLQLIRLMRKLRDTVRLSLILITHDLVSAGRICDTIAVMYAGKIVEEGR CCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCC GSLLLTEPLHPYTQMLVDAVPILGLKKPLKSIPGEPPQVGGEISWCVFRERCPVAFEKCG CCEEEECCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHCC IHPPELYIMERKVSCWRYMNHGAR CCCCCEEEEHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7997159; 9384377 [H]