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The map label for this gene is 218533178

Identifier: 218533178

GI number: 218533178

Start: 5681806

End: 5682663

Strand: Reverse

Name: 218533178

Synonym: Mchl_5304

Alternate gene names: NA

Gene position: 5682663-5681806 (Counterclockwise)

Preceding gene: 218533179

Following gene: 218533177

Centisome position: 98.35

GC content: 67.95

Gene sequence:

>858_bases
ATGATCGCATCGCATCGTCTGGCGCTGGCGGCCACGCTCGCGACCGGCACCCTCCTCGGGGTTCTGACCGGCTCCTTCGC
GTCCCCTGCCGCCGCGGCGGATCTGCTTCCGCCGCCCCCGCCACCGCCCGTGCAAGTCGAGCCGGTGACCATCGGCAGCG
GATGGTATCTGCGCGGCGACTTGACGCAGAGCTGGTACGACCACCCGCGCGACGACGCCATTCTCGATCCGAACGATCCC
GGCATGCCGCCGCTCGTCGGGCTGCGCCTGAGTTCCGAGACCGGTTACGGCGGCGGCGTCGGCTACCAGATCAATCCGTG
GCTGCGCGTCGATGCCACCATCGACCAGCGCGCCGCCTCGTCCTTCCGTGGCTATTCCTCGCGCTCGGTGTTCGAGACCG
GCTACAATCTCGAAGCCGGCAAGGTCGATGTGCTGACCGGCCTCGTCAACGTCTACGCCGATATCGGAACGTGGTACGGC
TTCACGCCTTACGTCGGCGCGGGCGTCGGCTTCGCCGACAAGCGCATGAGCCGCAACTACACCCAGACCACCTGCCTGAT
CGACGGCTGCGACGGGTCTGCGGGCACGGGACCGCGCAACGCCGCCTTCCGCGCCAACCACTCGGTCATGACCTTCGCCT
GGGCTCTGACGGCCGGTCTGTCCTACGATATCGGCGCCGGCTTCAGCGTCGACGCGGCCTACCGCTACATCGATCTCGGC
CGGATCCGCAGCGGACTGGACGAGTTCGGCGGCCTCACCCGCGTCAAGGATCTGACGGCCAGCGAATTCCGAATCGGCCT
TCGCTACCGCTTCGCCGACGGCCTGCTCGCCTCTCCCGTTCGGAACTTCGGCAACTGA

Upstream 100 bases:

>100_bases
ATCCCTGCCGGTTAAGGTTAAGCCGATCATAACCTTTATCGGCAAATCTGCCGGTCAATCGAGGCGCGGGCATCTCCTGC
TGCCTCAGACGAGGCTTCCC

Downstream 100 bases:

>100_bases
GTCGATCACGATCGTTCCTCAGGAACGCACGGCGTCCGGGCTTAACCCCCGGGCGCCGTTCTCGTTTGGGCCGTCGCACA
GAACGTCTGCGTCTCGCCGA

Product: porin opacity type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MIASHRLALAATLATGTLLGVLTGSFASPAAAADLLPPPPPPPVQVEPVTIGSGWYLRGDLTQSWYDHPRDDAILDPNDP
GMPPLVGLRLSSETGYGGGVGYQINPWLRVDATIDQRAASSFRGYSSRSVFETGYNLEAGKVDVLTGLVNVYADIGTWYG
FTPYVGAGVGFADKRMSRNYTQTTCLIDGCDGSAGTGPRNAAFRANHSVMTFAWALTAGLSYDIGAGFSVDAAYRYIDLG
RIRSGLDEFGGLTRVKDLTASEFRIGLRYRFADGLLASPVRNFGN

Sequences:

>Translated_285_residues
MIASHRLALAATLATGTLLGVLTGSFASPAAAADLLPPPPPPPVQVEPVTIGSGWYLRGDLTQSWYDHPRDDAILDPNDP
GMPPLVGLRLSSETGYGGGVGYQINPWLRVDATIDQRAASSFRGYSSRSVFETGYNLEAGKVDVLTGLVNVYADIGTWYG
FTPYVGAGVGFADKRMSRNYTQTTCLIDGCDGSAGTGPRNAAFRANHSVMTFAWALTAGLSYDIGAGFSVDAAYRYIDLG
RIRSGLDEFGGLTRVKDLTASEFRIGLRYRFADGLLASPVRNFGN
>Mature_285_residues
MIASHRLALAATLATGTLLGVLTGSFASPAAAADLLPPPPPPPVQVEPVTIGSGWYLRGDLTQSWYDHPRDDAILDPNDP
GMPPLVGLRLSSETGYGGGVGYQINPWLRVDATIDQRAASSFRGYSSRSVFETGYNLEAGKVDVLTGLVNVYADIGTWYG
FTPYVGAGVGFADKRMSRNYTQTTCLIDGCDGSAGTGPRNAAFRANHSVMTFAWALTAGLSYDIGAGFSVDAAYRYIDLG
RIRSGLDEFGGLTRVKDLTASEFRIGLRYRFADGLLASPVRNFGN

Specific function: Unknown

COG id: COG3637

COG function: function code M; Opacity protein and related surface antigens

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen msp4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017690
- InterPro:   IPR011250
- InterPro:   IPR002566 [H]

Pfam domain/function: PF01617 Surface_Ag_2 [H]

EC number: NA

Molecular weight: Translated: 30361; Mature: 30361

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIASHRLALAATLATGTLLGVLTGSFASPAAAADLLPPPPPPPVQVEPVTIGSGWYLRGD
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCEEEEEEECCCEEEECC
LTQSWYDHPRDDAILDPNDPGMPPLVGLRLSSETGYGGGVGYQINPWLRVDATIDQRAAS
CCHHHHCCCCCCCEECCCCCCCCCEEEEEEECCCCCCCCCCEEECCEEEEECCHHHHHHH
SFRGYSSRSVFETGYNLEAGKVDVLTGLVNVYADIGTWYGFTPYVGAGVGFADKRMSRNY
HHCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHCCCC
TQTTCLIDGCDGSAGTGPRNAAFRANHSVMTFAWALTAGLSYDIGAGFSVDAAYRYIDLG
CEEEEEEECCCCCCCCCCCCCEEECCCCCEEHHHHHHHCCCCCCCCCCCHHHHHHHEEHH
RIRSGLDEFGGLTRVKDLTASEFRIGLRYRFADGLLASPVRNFGN
HHHHHHHHHCCCHHHHHCCCCCEEEEEEEEECCCHHHHHHHHCCC
>Mature Secondary Structure
MIASHRLALAATLATGTLLGVLTGSFASPAAAADLLPPPPPPPVQVEPVTIGSGWYLRGD
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCEEEEEEECCCEEEECC
LTQSWYDHPRDDAILDPNDPGMPPLVGLRLSSETGYGGGVGYQINPWLRVDATIDQRAAS
CCHHHHCCCCCCCEECCCCCCCCCEEEEEEECCCCCCCCCCEEECCEEEEECCHHHHHHH
SFRGYSSRSVFETGYNLEAGKVDVLTGLVNVYADIGTWYGFTPYVGAGVGFADKRMSRNY
HHCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHCCCC
TQTTCLIDGCDGSAGTGPRNAAFRANHSVMTFAWALTAGLSYDIGAGFSVDAAYRYIDLG
CEEEEEEECCCCCCCCCCCCCEEECCCCCEEHHHHHHHCCCCCCCCCCCHHHHHHHEEHH
RIRSGLDEFGGLTRVKDLTASEFRIGLRYRFADGLLASPVRNFGN
HHHHHHHHHCCCHHHHHCCCCCEEEEEEEEECCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA