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The map label for this gene is ybgC [H]

Identifier: 218533106

GI number: 218533106

Start: 5599913

End: 5600344

Strand: Reverse

Name: ybgC [H]

Synonym: Mchl_5232

Alternate gene names: 218533106

Gene position: 5600344-5599913 (Counterclockwise)

Preceding gene: 218533107

Following gene: 218533104

Centisome position: 96.93

GC content: 69.21

Gene sequence:

>432_bases
ATGGATCCGACCACAGGCGCCGATGCGCACCGCCTTCCGCTGCGCGTCTACTACGAGGACACCGATTTCTCGGGCTTCGT
CTATCACGCGAGCTACCTGCGCTTCATGGAGCGGGGCCGCACCGAACTCCTGCGCACGCTCGCGGGCGACCAGTCCGAGA
TGCACGCGGAGGGCACAGGGCTCGTCTTCGTCGTGCGGAAGATGACCCTCGACTTCCTCAAGCCCGCCCGCATGGACGAT
TGGATCGAGGTTCACACCCGATCGAGCGAGCTGCGCGGCGCCTCGATGCACCTCGCCCAGGAGGTCCGTCGCGGGGACGA
GGTGCTGGTGCGCGCCGACGTCGTGGTCGCCTGCGTCAGGGACGGGCGCGCGATCCGCCTGCCCGAAGGACTGCGCCGGG
CCCTGACGCCGGCCGGTCTCAGATCCGCCTGA

Upstream 100 bases:

>100_bases
GCCGATGTCGAACCGGCCCGCTGGAAAGGGCGCCGCCCGACCTCTCGCCACTCATGACGAGACCCGCTAAATGACGGGAT
CCCTACGAACCCGGACGTCC

Downstream 100 bases:

>100_bases
CCTCGACCAGGAATTCCTGAACCGCCCGCGTCACCTGTTCCATCTGCTGGTCCAGGATCGTCGTCGCGGAGAGGACCGAG
CGGGCCGAGCCGGCCGAGGT

Product: tol-pal system-associated acyl-CoA thioesterase

Products: NA

Alternate protein names: Acyl-CoA thioesterase [H]

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MDPTTGADAHRLPLRVYYEDTDFSGFVYHASYLRFMERGRTELLRTLAGDQSEMHAEGTGLVFVVRKMTLDFLKPARMDD
WIEVHTRSSELRGASMHLAQEVRRGDEVLVRADVVVACVRDGRAIRLPEGLRRALTPAGLRSA

Sequences:

>Translated_143_residues
MDPTTGADAHRLPLRVYYEDTDFSGFVYHASYLRFMERGRTELLRTLAGDQSEMHAEGTGLVFVVRKMTLDFLKPARMDD
WIEVHTRSSELRGASMHLAQEVRRGDEVLVRADVVVACVRDGRAIRLPEGLRRALTPAGLRSA
>Mature_143_residues
MDPTTGADAHRLPLRVYYEDTDFSGFVYHASYLRFMERGRTELLRTLAGDQSEMHAEGTGLVFVVRKMTLDFLKPARMDD
WIEVHTRSSELRGASMHLAQEVRRGDEVLVRADVVVACVRDGRAIRLPEGLRRALTPAGLRSA

Specific function: Thioesterase that appears to be involved in phospholipid metabolism. Some specific acyl-ACPs could be physiological substrates. Displays acyl-CoA thioesterase activity on malonyl-CoA in vitro, catalyzing the hydrolysis of the thioester bond [H]

COG id: COG0824

COG function: function code R; Predicted thioesterase

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 4-hydroxybenzoyl-CoA thioesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786957, Length=110, Percent_Identity=47.2727272727273, Blast_Score=102, Evalue=8e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006684
- InterPro:   IPR008272
- InterPro:   IPR006683
- InterPro:   IPR014166 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 16160; Mature: 16160

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPTTGADAHRLPLRVYYEDTDFSGFVYHASYLRFMERGRTELLRTLAGDQSEMHAEGTG
CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHCCCCCC
LVFVVRKMTLDFLKPARMDDWIEVHTRSSELRGASMHLAQEVRRGDEVLVRADVVVACVR
CEEHHHHHHHHHHCCCCCCCHHEEECCCCCCCCHHHHHHHHHHCCCCEEEEHHHHEEEEC
DGRAIRLPEGLRRALTPAGLRSA
CCCEEECCHHHHHHCCCCCCCCC
>Mature Secondary Structure
MDPTTGADAHRLPLRVYYEDTDFSGFVYHASYLRFMERGRTELLRTLAGDQSEMHAEGTG
CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHCCCCCC
LVFVVRKMTLDFLKPARMDDWIEVHTRSSELRGASMHLAQEVRRGDEVLVRADVVVACVR
CEEHHHHHHHHHHCCCCCCCHHEEECCCCCCCCHHHHHHHHHHCCCCEEEEHHHHEEEEC
DGRAIRLPEGLRRALTPAGLRSA
CCCEEECCHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]