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The map label for this gene is exbD [H]

Identifier: 218533103

GI number: 218533103

Start: 5597021

End: 5597470

Strand: Reverse

Name: exbD [H]

Synonym: Mchl_5229

Alternate gene names: 218533103

Gene position: 5597470-5597021 (Counterclockwise)

Preceding gene: 218533104

Following gene: 218533102

Centisome position: 96.88

GC content: 66.44

Gene sequence:

>450_bases
ATGGGCATGACGCACGGCGCGGCACAGGGCGGCGGCAAGCGCCGCCGCCGCGGACGGCGCGGACACGGCGCCATCAACGA
AATCAACATGACGCCGTTCATCGACGTGGTGCTGGTGCTGCTGATCGTCTTCATGGTCGCCGCCCCGATGATGACGGTCG
GCGTGCCCCTCGACCTGCCGCAATCGAAGGCGAGCCCGCTCAATTCCGACGTCAAGCCGATCACGATCTCGATCCGCCGC
ACGGGCGAGGTCTATCTCGGTGAGGTCGAGTTGAAGGACGACGACATCGTGCCCCAGCTCATGCAGACCTCCAAGACCGG
CACCGAGGAGCGGGTGTTCGTGCGCGGCGACAAGCGCGTCGATTACGGGCGCGTGGCCCAGGTGATGGCGATCGTGACCG
GCGGCGGCTTCAAGAAGGTCGCCCTCGTCACCGAGCCGGAAGCGAATTAG

Upstream 100 bases:

>100_bases
TCGGCGATCCTGTCGCGGCAGATCGACGAGCGCCTCTCGGTCGCCGCCTGAGCGCCTGAAGCAGATCGAGAGCGGGAGCT
GAATCGATGGGCAAGACGCG

Downstream 100 bases:

>100_bases
CGGAGCAAGGCACCGTGGCTCTGCGCTGGCCCACTTCCCTCACCGAGTCTTTTCGAAATCGCGAACCCGGCGTCTGGATC
TCGGCCGCGGTCCATGCCGT

Product: biopolymertransporter ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MGMTHGAAQGGGKRRRRGRRGHGAINEINMTPFIDVVLVLLIVFMVAAPMMTVGVPLDLPQSKASPLNSDVKPITISIRR
TGEVYLGEVELKDDDIVPQLMQTSKTGTEERVFVRGDKRVDYGRVAQVMAIVTGGGFKKVALVTEPEAN

Sequences:

>Translated_149_residues
MGMTHGAAQGGGKRRRRGRRGHGAINEINMTPFIDVVLVLLIVFMVAAPMMTVGVPLDLPQSKASPLNSDVKPITISIRR
TGEVYLGEVELKDDDIVPQLMQTSKTGTEERVFVRGDKRVDYGRVAQVMAIVTGGGFKKVALVTEPEAN
>Mature_148_residues
GMTHGAAQGGGKRRRRGRRGHGAINEINMTPFIDVVLVLLIVFMVAAPMMTVGVPLDLPQSKASPLNSDVKPITISIRRT
GEVYLGEVELKDDDIVPQLMQTSKTGTEERVFVRGDKRVDYGRVAQVMAIVTGGGFKKVALVTEPEAN

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=127, Percent_Identity=37.7952755905512, Blast_Score=97, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 16145; Mature: 16014

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMTHGAAQGGGKRRRRGRRGHGAINEINMTPFIDVVLVLLIVFMVAAPMMTVGVPLDLP
CCCCCCCCCCCCHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
QSKASPLNSDVKPITISIRRTGEVYLGEVELKDDDIVPQLMQTSKTGTEERVFVRGDKRV
CCCCCCCCCCCCEEEEEEEECCCEEEEEEEECCCCHHHHHHHHCCCCCCCEEEEECCCCC
DYGRVAQVMAIVTGGGFKKVALVTEPEAN
CHHHHHHHHHHHCCCCCEEEEEEECCCCC
>Mature Secondary Structure 
GMTHGAAQGGGKRRRRGRRGHGAINEINMTPFIDVVLVLLIVFMVAAPMMTVGVPLDLP
CCCCCCCCCCCHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
QSKASPLNSDVKPITISIRRTGEVYLGEVELKDDDIVPQLMQTSKTGTEERVFVRGDKRV
CCCCCCCCCCCCEEEEEEEECCCEEEEEEEECCCCHHHHHHHHCCCCCCCEEEEECCCCC
DYGRVAQVMAIVTGGGFKKVALVTEPEAN
CHHHHHHHHHHHCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]