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The map label for this gene is rarD [C]

Identifier: 218532505

GI number: 218532505

Start: 4895726

End: 4896610

Strand: Reverse

Name: rarD [C]

Synonym: Mchl_4619

Alternate gene names: 218532505

Gene position: 4896610-4895726 (Counterclockwise)

Preceding gene: 218532506

Following gene: 218532504

Centisome position: 84.75

GC content: 70.73

Gene sequence:

>885_bases
TTGGGCCTGATCTACGCGCTCGCCGCCTATCTGAGCTGGGGCCTCGTCGTCCCCGTGCATTTCCGGCTCCTCGACGGCAT
CCCGCCGGGCACGATCCTGGCGCAGCGCATCGCATGGTCGGCGCTGCTCGTGGTCGGCCTGATCGCGCTGCTGCGCAAGC
GGCTCGCCAACCCGTTCCCGCTGCGGCCGCGCCATGGCCTGCTCGTCGTCTCGGCGGGTCTGATCGCGATCAACTGGATG
CTCTACCTCGTGGCGGTGTCGAGCGGGCACATGCTCGATGCGAGCCTGGGCTACTTCATCAACCCGCTGGTCTCGGTGGC
ACTCGGCGCCCTCGTTCTCGGCGAGCGCCTGCGCCCGGTCCAGGTGGTGGCCGTGGCCATCGTCGTGCTCGGCGTGGTGA
TCGCGGTGGCGATGGCGGGGCGCCTGCCGCTGCTGTCGCTCGGGCTCGCGGTCACCTTCGCGCTCTACGGGCTGGTGCGC
AAACTCGTCGCCGTCGATGGCACCGTCGGCTTCTGCGCCGAGACCTTCCTGCTCCTGCCCGCGGCTCTGGCCTATCTCGC
CTTCGTCGCGCCCCCGGTGCCCGACGACGCCCACACTTGGGCGCTGCTGGCGCTCACGGGCGTGACCACGGCGCTGCCGC
TGATCTGGTTCGCCGCCGCGGCGACCCGGCTGACGCTGGCGACCCTCGGGCTGATGCAGTACATCGCGCCCTCCTGCCTG
ATGGGGCTCAGCACGCTGGTCTACGGCGAGACCCTGACGCCAGACCGCCTCGTGCTGTTCGGGCTGATCTGGCTGGCGCT
GATGCTCTACGCCTACGATGCGATCCGCCACGAGCGCAGGCGCCGCGCCGCGTTGACGACGGGACCGGCAGGAGAGAGGC
GATGA

Upstream 100 bases:

>100_bases
GATGCGCGGCGAGACGCCGGCAGCCCCCGCCCGCAAGCGCTGACCGCGCCCCCAGTCCGCGCTACAAGCGGCGCCCCGCC
ACGCCGCCGCTCGTGCAATC

Downstream 100 bases:

>100_bases
TCCGGCTCAACCGCATCACCGACATCTCGGGAATCCGCGTCGGCAACGCGGAAGACGAAAGAATCGCGAGCGGCGTCACC
GCGCTCGTGTTCGAACAACC

Product: RarD protein, DMT superfamily transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MGLIYALAAYLSWGLVVPVHFRLLDGIPPGTILAQRIAWSALLVVGLIALLRKRLANPFPLRPRHGLLVVSAGLIAINWM
LYLVAVSSGHMLDASLGYFINPLVSVALGALVLGERLRPVQVVAVAIVVLGVVIAVAMAGRLPLLSLGLAVTFALYGLVR
KLVAVDGTVGFCAETFLLLPAALAYLAFVAPPVPDDAHTWALLALTGVTTALPLIWFAAAATRLTLATLGLMQYIAPSCL
MGLSTLVYGETLTPDRLVLFGLIWLALMLYAYDAIRHERRRRAALTTGPAGERR

Sequences:

>Translated_294_residues
MGLIYALAAYLSWGLVVPVHFRLLDGIPPGTILAQRIAWSALLVVGLIALLRKRLANPFPLRPRHGLLVVSAGLIAINWM
LYLVAVSSGHMLDASLGYFINPLVSVALGALVLGERLRPVQVVAVAIVVLGVVIAVAMAGRLPLLSLGLAVTFALYGLVR
KLVAVDGTVGFCAETFLLLPAALAYLAFVAPPVPDDAHTWALLALTGVTTALPLIWFAAAATRLTLATLGLMQYIAPSCL
MGLSTLVYGETLTPDRLVLFGLIWLALMLYAYDAIRHERRRRAALTTGPAGERR
>Mature_293_residues
GLIYALAAYLSWGLVVPVHFRLLDGIPPGTILAQRIAWSALLVVGLIALLRKRLANPFPLRPRHGLLVVSAGLIAINWML
YLVAVSSGHMLDASLGYFINPLVSVALGALVLGERLRPVQVVAVAIVVLGVVIAVAMAGRLPLLSLGLAVTFALYGLVRK
LVAVDGTVGFCAETFLLLPAALAYLAFVAPPVPDDAHTWALLALTGVTTALPLIWFAAAATRLTLATLGLMQYIAPSCLM
GLSTLVYGETLTPDRLVLFGLIWLALMLYAYDAIRHERRRRAALTTGPAGERR

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=288, Percent_Identity=42.7083333333333, Blast_Score=211, Evalue=6e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 31387; Mature: 31256

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLIYALAAYLSWGLVVPVHFRLLDGIPPGTILAQRIAWSALLVVGLIALLRKRLANPFP
CHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LRPRHGLLVVSAGLIAINWMLYLVAVSSGHMLDASLGYFINPLVSVALGALVLGERLRPV
CCCCCCEEEEHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCHH
QVVAVAIVVLGVVIAVAMAGRLPLLSLGLAVTFALYGLVRKLVAVDGTVGFCAETFLLLP
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
AALAYLAFVAPPVPDDAHTWALLALTGVTTALPLIWFAAAATRLTLATLGLMQYIAPSCL
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MGLSTLVYGETLTPDRLVLFGLIWLALMLYAYDAIRHERRRRAALTTGPAGERR
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
GLIYALAAYLSWGLVVPVHFRLLDGIPPGTILAQRIAWSALLVVGLIALLRKRLANPFP
HHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LRPRHGLLVVSAGLIAINWMLYLVAVSSGHMLDASLGYFINPLVSVALGALVLGERLRPV
CCCCCCEEEEHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCHH
QVVAVAIVVLGVVIAVAMAGRLPLLSLGLAVTFALYGLVRKLVAVDGTVGFCAETFLLLP
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
AALAYLAFVAPPVPDDAHTWALLALTGVTTALPLIWFAAAATRLTLATLGLMQYIAPSCL
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MGLSTLVYGETLTPDRLVLFGLIWLALMLYAYDAIRHERRRRAALTTGPAGERR
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]