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The map label for this gene is agmR [H]

Identifier: 218532476

GI number: 218532476

Start: 4866950

End: 4867684

Strand: Reverse

Name: agmR [H]

Synonym: Mchl_4590

Alternate gene names: 218532476

Gene position: 4867684-4866950 (Counterclockwise)

Preceding gene: 218532477

Following gene: 218532472

Centisome position: 84.25

GC content: 69.8

Gene sequence:

>735_bases
ATGATCGCGATGACGGCCAGCGCACAATCGGATATCGGCGGCCACTCCGACGAGGCGGCTCCCCTGGCAGGCGGACAGGC
CCTGCGCCTCCTGATCGTCGACGATCACCCCCTGTTCCGCGAGGCGCTGGCGAGCGCCATCGCGCTCGCCTTCCCCGAGG
CCGTTTTGCACGAGGCGGACGGCATCGGCACGGCCTGCGAGATCCTGGGCCGGAACCCCGCCATCGACCTGACGCTGCTC
GATCTCTCGATGCAGGGCGTGACCGGGTTCGAGGGACTCACCGCGATCCGCACCCGCTTTCCCCGCGTGCCGATCCTGAT
CGTCTCCGGCGTCACCGATCCGCGCATCATGCACGAGGCCGTGCGGCACGGCGCGGCCGGCTTCGTGCCCAAGGCCGTCG
ACAAGGCGACCCTGACCCGGGCGATCTCCGAGGTCCTCGGCGGCGCCCTGTTCATGCCGCCCGATCTCGCCGCCGCGCCG
GCCCCGGCGCGGGGCGGCGACAAGGCACCGATCGCCGAGCGGGTCGCGCGCCTGACCCCGCAGCAAATGCGGGTGCTCGG
CATGATCCGCCAGGGCAAGCTCAACAAGCAGATCGCCTACGAGCTGCAGGTCGGCGACTCGACGGTGAAGGCCCACGTCT
CCGAGATCCTGCGCAAGCTCGAAGTCATCAGCCGCACGCAGATCGTGATCGAGACGGCCTATGTCGATTTCGATCAGGCG
GGCGGGGGGTTCTGA

Upstream 100 bases:

>100_bases
GACGGGCGGGATGGACCAAAGACCGGGAAGCGGCGGATCTCGAATCGGCTTAAGATCGGCGAATGGGCCCTCGCCGGCCA
GTGCCGGCGCGCCGGAAGAC

Downstream 100 bases:

>100_bases
GCGGGATCGCCTTCAGGCGAACCGTTTCGCCGCGACGACGCACAGCACCACCCCGGCGGCGACCGCGACCATCGCCCCCT
CGACCGGCTCGCCCAGCAGA

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MIAMTASAQSDIGGHSDEAAPLAGGQALRLLIVDDHPLFREALASAIALAFPEAVLHEADGIGTACEILGRNPAIDLTLL
DLSMQGVTGFEGLTAIRTRFPRVPILIVSGVTDPRIMHEAVRHGAAGFVPKAVDKATLTRAISEVLGGALFMPPDLAAAP
APARGGDKAPIAERVARLTPQQMRVLGMIRQGKLNKQIAYELQVGDSTVKAHVSEILRKLEVISRTQIVIETAYVDFDQA
GGGF

Sequences:

>Translated_244_residues
MIAMTASAQSDIGGHSDEAAPLAGGQALRLLIVDDHPLFREALASAIALAFPEAVLHEADGIGTACEILGRNPAIDLTLL
DLSMQGVTGFEGLTAIRTRFPRVPILIVSGVTDPRIMHEAVRHGAAGFVPKAVDKATLTRAISEVLGGALFMPPDLAAAP
APARGGDKAPIAERVARLTPQQMRVLGMIRQGKLNKQIAYELQVGDSTVKAHVSEILRKLEVISRTQIVIETAYVDFDQA
GGGF
>Mature_244_residues
MIAMTASAQSDIGGHSDEAAPLAGGQALRLLIVDDHPLFREALASAIALAFPEAVLHEADGIGTACEILGRNPAIDLTLL
DLSMQGVTGFEGLTAIRTRFPRVPILIVSGVTDPRIMHEAVRHGAAGFVPKAVDKATLTRAISEVLGGALFMPPDLAAAP
APARGGDKAPIAERVARLTPQQMRVLGMIRQGKLNKQIAYELQVGDSTVKAHVSEILRKLEVISRTQIVIETAYVDFDQA
GGGF

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=200, Percent_Identity=31.5, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787473, Length=184, Percent_Identity=30.9782608695652, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1786747, Length=191, Percent_Identity=25.6544502617801, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789937, Length=151, Percent_Identity=28.476821192053, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788712, Length=197, Percent_Identity=25.8883248730964, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788222, Length=198, Percent_Identity=24.7474747474747, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 25741; Mature: 25741

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAMTASAQSDIGGHSDEAAPLAGGQALRLLIVDDHPLFREALASAIALAFPEAVLHEAD
CEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCC
GIGTACEILGRNPAIDLTLLDLSMQGVTGFEGLTAIRTRFPRVPILIVSGVTDPRIMHEA
CCCHHHHHHCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH
VRHGAAGFVPKAVDKATLTRAISEVLGGALFMPPDLAAAPAPARGGDKAPIAERVARLTP
HHCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCH
QQMRVLGMIRQGKLNKQIAYELQVGDSTVKAHVSEILRKLEVISRTQIVIETAYVDFDQA
HHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHEEEEEEEECHHCC
GGGF
CCCC
>Mature Secondary Structure
MIAMTASAQSDIGGHSDEAAPLAGGQALRLLIVDDHPLFREALASAIALAFPEAVLHEAD
CEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCC
GIGTACEILGRNPAIDLTLLDLSMQGVTGFEGLTAIRTRFPRVPILIVSGVTDPRIMHEA
CCCHHHHHHCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH
VRHGAAGFVPKAVDKATLTRAISEVLGGALFMPPDLAAAPAPARGGDKAPIAERVARLTP
HHCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCH
QQMRVLGMIRQGKLNKQIAYELQVGDSTVKAHVSEILRKLEVISRTQIVIETAYVDFDQA
HHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHEEEEEEEECHHCC
GGGF
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]