| Definition | Methylobacterium chloromethanicum CM4, complete genome. |
|---|---|
| Accession | NC_011757 |
| Length | 5,777,908 |
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The map label for this gene is yhdF [H]
Identifier: 218532461
GI number: 218532461
Start: 4843232
End: 4844104
Strand: Reverse
Name: yhdF [H]
Synonym: Mchl_4573
Alternate gene names: 218532461
Gene position: 4844104-4843232 (Counterclockwise)
Preceding gene: 218532462
Following gene: 218532458
Centisome position: 83.84
GC content: 66.9
Gene sequence:
>873_bases ATGACCGATCCGCTGACCAAATACCCGCGCCCGCCCTTCGAGACGCCGCCCCAGAGTTTCCCCGGCAAGACGGCAAAGAT GGCGCCCGAGCCGGATCACGGCGAGGAGAGCTACAAGGGCTCCGGCAAGCTCACCGGAAAAGCCGCTTTGGTGACGGGCG GCGACAGCGGCATCGGCCGGGCAGTGGCCATCGCCTATGCCCGCGAGGGCGCCGACGTAGCAATCTCCTACCTGCCCGAC GAGCAGAAGGATGCGGAGGCCGTCGGCAACTGGATCGAGAAGGCGGGCCGGCGCGCCCTGCTGCTCCCCGGCGACATCAA GGACGCGGCGTACGCCCGCGAGATCGTCGAGCGCACGGCCAAGGAATTCGGCCGGCTCGATATCCTGGTGAACAACGCCG CCTTCCAGCAGCCGAACCAGGGCGTCACCGACATTGACGACGCGTTGTTCGAAAAACACTTCCAGACCAACATCTTCGGT CCGTTCTACGCCACCAAGGCGGCGCTGGCGCATCTCAAGCCCGGCGCCTCGGTGATCTTCACCTCCTCGGTCAATTCCAA GCACCCGGTGCCGACCCTGTTCGCCTACAGCGCCACCAAGGGCGCGCTCAGCAACATGGTGCTCGGCCTCGCGCAGTTGC TCGCCGAAAAGGGCATCCGCGTGAACGGCGTGCTGCCCGGCCCGATCTGGACCCCGTTCATCCCCGCCGGGATGAGCGAG GATGCGGTGAAGACCTTCGGCAGCCAAGTGCCGTTCAACCGCCCCGGCCAGCCGGCGGAACTCGCGTCGGCCTACGTGAT GCTGGCGGCCGAAGAGAGCAGCTACACCTCCGGCGCCCTCATCACCGTCGCGGGCGGCATGCCGATCTTCTGA
Upstream 100 bases:
>100_bases GCGGCCCTGACGCCGGGGCGCTGAGCGCGGCTCTGCAACGGCGGGTGGAACACCCGCCGGCTGCCCCCGTTGACGCGGCA ATCCCTCAAAAGGAGCCGTG
Downstream 100 bases:
>100_bases AGTCGAGGTTTCGAAAGGACAGGTCCTTTCGCGGGTCCAGGGCAGAGCCCTGGAAGAATGCCGGGGCTCTGCCCTGGCGC CCCGCCATAGGGATGATCCC
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 290; Mature: 289
Protein sequence:
>290_residues MTDPLTKYPRPPFETPPQSFPGKTAKMAPEPDHGEESYKGSGKLTGKAALVTGGDSGIGRAVAIAYAREGADVAISYLPD EQKDAEAVGNWIEKAGRRALLLPGDIKDAAYAREIVERTAKEFGRLDILVNNAAFQQPNQGVTDIDDALFEKHFQTNIFG PFYATKAALAHLKPGASVIFTSSVNSKHPVPTLFAYSATKGALSNMVLGLAQLLAEKGIRVNGVLPGPIWTPFIPAGMSE DAVKTFGSQVPFNRPGQPAELASAYVMLAAEESSYTSGALITVAGGMPIF
Sequences:
>Translated_290_residues MTDPLTKYPRPPFETPPQSFPGKTAKMAPEPDHGEESYKGSGKLTGKAALVTGGDSGIGRAVAIAYAREGADVAISYLPD EQKDAEAVGNWIEKAGRRALLLPGDIKDAAYAREIVERTAKEFGRLDILVNNAAFQQPNQGVTDIDDALFEKHFQTNIFG PFYATKAALAHLKPGASVIFTSSVNSKHPVPTLFAYSATKGALSNMVLGLAQLLAEKGIRVNGVLPGPIWTPFIPAGMSE DAVKTFGSQVPFNRPGQPAELASAYVMLAAEESSYTSGALITVAGGMPIF >Mature_289_residues TDPLTKYPRPPFETPPQSFPGKTAKMAPEPDHGEESYKGSGKLTGKAALVTGGDSGIGRAVAIAYAREGADVAISYLPDE QKDAEAVGNWIEKAGRRALLLPGDIKDAAYAREIVERTAKEFGRLDILVNNAAFQQPNQGVTDIDDALFEKHFQTNIFGP FYATKAALAHLKPGASVIFTSSVNSKHPVPTLFAYSATKGALSNMVLGLAQLLAEKGIRVNGVLPGPIWTPFIPAGMSED AVKTFGSQVPFNRPGQPAELASAYVMLAAEESSYTSGALITVAGGMPIF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=30.6451612903226, Blast_Score=101, Evalue=9e-22, Organism=Homo sapiens, GI59889578, Length=228, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI19923817, Length=272, Percent_Identity=27.5735294117647, Blast_Score=90, Evalue=3e-18, Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=30.4, Blast_Score=88, Evalue=9e-18, Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=30.0395256916996, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI40254992, Length=252, Percent_Identity=32.1428571428571, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI4758504, Length=260, Percent_Identity=28.4615384615385, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI7706318, Length=216, Percent_Identity=29.1666666666667, Blast_Score=81, Evalue=9e-16, Organism=Homo sapiens, GI10190704, Length=265, Percent_Identity=29.811320754717, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI33667109, Length=197, Percent_Identity=31.9796954314721, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI66933014, Length=259, Percent_Identity=30.1158301158301, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI31542939, Length=218, Percent_Identity=27.9816513761468, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI126723750, Length=256, Percent_Identity=28.515625, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI4504505, Length=254, Percent_Identity=27.9527559055118, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI7705925, Length=250, Percent_Identity=28.8, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI40254986, Length=198, Percent_Identity=31.8181818181818, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI83715985, Length=260, Percent_Identity=26.5384615384615, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=31.7204301075269, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI32455239, Length=162, Percent_Identity=32.0987654320988, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI5031765, Length=162, Percent_Identity=32.0987654320988, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI1789378, Length=287, Percent_Identity=50.5226480836237, Blast_Score=273, Evalue=9e-75, Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=34.4262295081967, Blast_Score=124, Evalue=1e-29, Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=32.156862745098, Blast_Score=117, Evalue=9e-28, Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=31.3008130081301, Blast_Score=107, Evalue=8e-25, Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=31.1475409836066, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI2367365, Length=247, Percent_Identity=32.3886639676113, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=33.1967213114754, Blast_Score=104, Evalue=8e-24, Organism=Escherichia coli, GI87082160, Length=246, Percent_Identity=32.9268292682927, Blast_Score=101, Evalue=6e-23, Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=29.3172690763052, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1789208, Length=251, Percent_Identity=29.0836653386454, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1786812, Length=261, Percent_Identity=26.8199233716475, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1787526, Length=240, Percent_Identity=27.0833333333333, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787545, Length=263, Percent_Identity=25.0950570342205, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1786701, Length=229, Percent_Identity=30.1310043668122, Blast_Score=61, Evalue=8e-11, Organism=Caenorhabditis elegans, GI193204405, Length=266, Percent_Identity=34.9624060150376, Blast_Score=114, Evalue=5e-26, Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=31.4741035856574, Blast_Score=114, Evalue=8e-26, Organism=Caenorhabditis elegans, GI17560676, Length=251, Percent_Identity=34.6613545816733, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17562906, Length=261, Percent_Identity=34.4827586206897, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=32.4528301886792, Blast_Score=107, Evalue=9e-24, Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=33.969465648855, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=32.3308270676692, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17562990, Length=260, Percent_Identity=33.0769230769231, Blast_Score=100, Evalue=8e-22, Organism=Caenorhabditis elegans, GI17560150, Length=265, Percent_Identity=31.6981132075472, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=30.4, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=33.7164750957854, Blast_Score=98, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17563726, Length=261, Percent_Identity=30.6513409961686, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI72000259, Length=268, Percent_Identity=31.7164179104478, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71994600, Length=252, Percent_Identity=28.5714285714286, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17562904, Length=264, Percent_Identity=30.6818181818182, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17551412, Length=265, Percent_Identity=32.0754716981132, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17536025, Length=265, Percent_Identity=30.188679245283, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17560332, Length=267, Percent_Identity=30.7116104868914, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17538480, Length=272, Percent_Identity=29.7794117647059, Blast_Score=90, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17544670, Length=270, Percent_Identity=27.037037037037, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI25147288, Length=253, Percent_Identity=29.6442687747036, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=30.7984790874525, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17565030, Length=274, Percent_Identity=32.4817518248175, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI71982365, Length=259, Percent_Identity=27.7992277992278, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=30, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17538182, Length=259, Percent_Identity=32.8185328185328, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=32.0754716981132, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17564282, Length=197, Percent_Identity=32.994923857868, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17536651, Length=270, Percent_Identity=27.7777777777778, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17561272, Length=260, Percent_Identity=31.1538461538462, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=26.3157894736842, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17558628, Length=258, Percent_Identity=30.2325581395349, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17508651, Length=251, Percent_Identity=26.2948207171315, Blast_Score=69, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6322226, Length=233, Percent_Identity=27.0386266094421, Blast_Score=71, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6324126, Length=259, Percent_Identity=27.4131274131274, Blast_Score=70, Evalue=3e-13, Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=33.4677419354839, Blast_Score=117, Evalue=7e-27, Organism=Drosophila melanogaster, GI23397609, Length=253, Percent_Identity=33.9920948616601, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI28571526, Length=247, Percent_Identity=31.9838056680162, Blast_Score=103, Evalue=2e-22, Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=31.7269076305221, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI21357041, Length=248, Percent_Identity=30.241935483871, Blast_Score=95, Evalue=6e-20, Organism=Drosophila melanogaster, GI24639444, Length=254, Percent_Identity=29.9212598425197, Blast_Score=91, Evalue=7e-19, Organism=Drosophila melanogaster, GI24643142, Length=250, Percent_Identity=32.8, Blast_Score=88, Evalue=7e-18, Organism=Drosophila melanogaster, GI17737361, Length=262, Percent_Identity=28.6259541984733, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI24644337, Length=254, Percent_Identity=31.496062992126, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI21357673, Length=202, Percent_Identity=31.6831683168317, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI21358495, Length=212, Percent_Identity=29.2452830188679, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI18859837, Length=259, Percent_Identity=29.3436293436293, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24580925, Length=200, Percent_Identity=27, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI45554248, Length=210, Percent_Identity=27.6190476190476, Blast_Score=65, Evalue=7e-11, Organism=Drosophila melanogaster, GI24640117, Length=210, Percent_Identity=27.6190476190476, Blast_Score=65, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 30710; Mature: 30579
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: PS00061 ADH_SHORT ; PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDPLTKYPRPPFETPPQSFPGKTAKMAPEPDHGEESYKGSGKLTGKAALVTGGDSGIGR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC AVAIAYAREGADVAISYLPDEQKDAEAVGNWIEKAGRRALLLPGDIKDAAYAREIVERTA EEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHH KEFGRLDILVNNAAFQQPNQGVTDIDDALFEKHFQTNIFGPFYATKAALAHLKPGASVIF HHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEE TSSVNSKHPVPTLFAYSATKGALSNMVLGLAQLLAEKGIRVNGVLPGPIWTPFIPAGMSE EECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCH DAVKTFGSQVPFNRPGQPAELASAYVMLAAEESSYTSGALITVAGGMPIF HHHHHHCCCCCCCCCCCHHHHHHEEEEEEECCCCCCCCEEEEEECCCCCC >Mature Secondary Structure TDPLTKYPRPPFETPPQSFPGKTAKMAPEPDHGEESYKGSGKLTGKAALVTGGDSGIGR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC AVAIAYAREGADVAISYLPDEQKDAEAVGNWIEKAGRRALLLPGDIKDAAYAREIVERTA EEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHH KEFGRLDILVNNAAFQQPNQGVTDIDDALFEKHFQTNIFGPFYATKAALAHLKPGASVIF HHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEE TSSVNSKHPVPTLFAYSATKGALSNMVLGLAQLLAEKGIRVNGVLPGPIWTPFIPAGMSE EECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCH DAVKTFGSQVPFNRPGQPAELASAYVMLAAEESSYTSGALITVAGGMPIF HHHHHHCCCCCCCCCCCHHHHHHEEEEEEECCCCCCCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]