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The map label for this gene is flgD [H]

Identifier: 218532350

GI number: 218532350

Start: 4721771

End: 4722451

Strand: Reverse

Name: flgD [H]

Synonym: Mchl_4462

Alternate gene names: 218532350

Gene position: 4722451-4721771 (Counterclockwise)

Preceding gene: 218532351

Following gene: 218532349

Centisome position: 81.73

GC content: 66.96

Gene sequence:

>681_bases
ATGGCCGCCGGCATCACGAGCAATACGAGCAGCACCAGCATCACCGGGACGAGTGCCGCCTCGACCACCGACACGAAGTC
GATCGCGGGCAACTTCACGCAGTTCCTGACGCTGCTGACCACGCAGCTCAAGAATCAGAATCCGCTCGATCCGCTCGACA
CCAACCAGTTCACCCAGCAGCTCGTGCAGTTCGCGGGCGTCGAGCAGCAGCTCAAGACCAATTCCTCGCTCGACACGATC
CTGACCAACTCCAAGGCGGCATCGGCCTCGTCCGCCTCCGGCCTGATCGGCCGGACGATCACCGCGGACGGCGCCACCAC
CGATCTGACGAACGGCAAGGCGACCTGGACGCTGACCCCGGACCGGGCCGCCGCCAGGGCCGTCATCACCCTCAAGGCCA
GCGACGGCACCGTGGTGGCCACCAAGACCACGACGCTCAAGGCCGGCGCGCAACCCTTCGAATGGGACGGCACCGGGACC
TCGGGCCTCTCGGCCAAGGACGGGCGCTACACGATCACCGTGGATGCCCTCGACACGACGGGGACGAAAGTGGCCGTCGA
CACCAAGGTTTCGGGCGTCGTGGACGGCGTCGACCTCAGCGGCTCCGAACCCGTGCTGACGATCGGCACGGCCCGGGTGC
CGGCCTCGAGCGTGAAAACCCTTTCTGCGCCAACCGCTTGA

Upstream 100 bases:

>100_bases
GCCGGGCGGACGGGACGCCCGCCCCTCCCCGCTCGACGCCATTCCCCTGCGGCAGCTCCGTGCCGTCGGCAATCTCGACA
TCCGGATTTAGGACGACGCC

Downstream 100 bases:

>100_bases
TGCGCTGCAGCATCGATGGATCCGGAATTGTCCACATCTGCGCACAACAATCGAATCGCATTCGAGCGGCCGACTTCAAG
AACTTTTAAGCGGGTGCAAG

Product: flagellar hook capping protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MAAGITSNTSSTSITGTSAASTTDTKSIAGNFTQFLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSSLDTI
LTNSKAASASSASGLIGRTITADGATTDLTNGKATWTLTPDRAAARAVITLKASDGTVVATKTTTLKAGAQPFEWDGTGT
SGLSAKDGRYTITVDALDTTGTKVAVDTKVSGVVDGVDLSGSEPVLTIGTARVPASSVKTLSAPTA

Sequences:

>Translated_226_residues
MAAGITSNTSSTSITGTSAASTTDTKSIAGNFTQFLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSSLDTI
LTNSKAASASSASGLIGRTITADGATTDLTNGKATWTLTPDRAAARAVITLKASDGTVVATKTTTLKAGAQPFEWDGTGT
SGLSAKDGRYTITVDALDTTGTKVAVDTKVSGVVDGVDLSGSEPVLTIGTARVPASSVKTLSAPTA
>Mature_225_residues
AAGITSNTSSTSITGTSAASTTDTKSIAGNFTQFLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSSLDTIL
TNSKAASASSASGLIGRTITADGATTDLTNGKATWTLTPDRAAARAVITLKASDGTVVATKTTTLKAGAQPFEWDGTGTS
GLSAKDGRYTITVDALDTTGTKVAVDTKVSGVVDGVDLSGSEPVLTIGTARVPASSVKTLSAPTA

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=185, Percent_Identity=34.5945945945946, Blast_Score=77, Evalue=8e-16,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 22921; Mature: 22789

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAGITSNTSSTSITGTSAASTTDTKSIAGNFTQFLTLLTTQLKNQNPLDPLDTNQFTQQ
CCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
LVQFAGVEQQLKTNSSLDTILTNSKAASASSASGLIGRTITADGATTDLTNGKATWTLTP
HHHHHCCHHHHHCCCCHHHEEECCCCCCCCCCCCCEEEEEECCCCEEECCCCEEEEEECC
DRAAARAVITLKASDGTVVATKTTTLKAGAQPFEWDGTGTSGLSAKDGRYTITVDALDTT
CCCCEEEEEEEECCCCEEEEEEEEEEECCCCCEECCCCCCCCCCCCCCEEEEEEEEECCC
GTKVAVDTKVSGVVDGVDLSGSEPVLTIGTARVPASSVKTLSAPTA
CCEEEEECCCCCEEECCCCCCCCCEEEEECCCCCHHHHHEECCCCC
>Mature Secondary Structure 
AAGITSNTSSTSITGTSAASTTDTKSIAGNFTQFLTLLTTQLKNQNPLDPLDTNQFTQQ
CCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
LVQFAGVEQQLKTNSSLDTILTNSKAASASSASGLIGRTITADGATTDLTNGKATWTLTP
HHHHHCCHHHHHCCCCHHHEEECCCCCCCCCCCCCEEEEEECCCCEEECCCCEEEEEECC
DRAAARAVITLKASDGTVVATKTTTLKAGAQPFEWDGTGTSGLSAKDGRYTITVDALDTT
CCCCEEEEEEEECCCCEEEEEEEEEEECCCCCEECCCCCCCCCCCCCCEEEEEEEEECCC
GTKVAVDTKVSGVVDGVDLSGSEPVLTIGTARVPASSVKTLSAPTA
CCEEEEECCCCCEEECCCCCCCCCEEEEECCCCCHHHHHEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]