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The map label for this gene is yhjC [C]

Identifier: 218532314

GI number: 218532314

Start: 4685346

End: 4686254

Strand: Reverse

Name: yhjC [C]

Synonym: Mchl_4426

Alternate gene names: 218532314

Gene position: 4686254-4685346 (Counterclockwise)

Preceding gene: 218532324

Following gene: 218532313

Centisome position: 81.11

GC content: 72.83

Gene sequence:

>909_bases
GTGCTCGACCGCGTGACGGGAATGCAGGTCTTCTGCCGCGTCGCCGCACTCGGCAGCTTCTCGGCCGCCGGGCGGGCGCT
CGGCCTCTCGCAGACCGGGGTCACCAAGCATGTCGCGGCCCTGGAGGCGCGACTCGGCACGCGGCTCCTGCACCGGACGA
CCCGCCGCCTGACGCTCACCGAAACCGGCCGGACCTATCTCGAGGCCTGCGAGCGTATTCTCGCCGAGATCGACGATGCG
GAGGCGGCGGTCGGTGCCGAAGGGGTCGAGGCCCACGGCACCCTGCGGCTCAACGTGCCGCTCTCCTTCGGCGTGCGGGA
GATCGCCCCGGCGCTCGCGGCGTTCTCCGCCGCGCATCCGGCGCTGACGATCGAACTCGGCCTCAACGACCGGCGGGTCG
ACCTGATCGAGGAGGGGTGGGATCTCGCCGTGCGGATCGGGACCCTCGCCGATTCGGGGCTGATCGCCCGGCGTCTCACA
TCCAGCCGCCTCGTGGCCTGCGGCGCGCCCGCCTATTTCGAGCGGCACGGCACGCCGCGCCGGCCCGAGGAGCTGAAGAA
CCACAATTGCCTGGGCTACACCCTGTCGGATTCCAGCGGCTGGCACTTCGGCGAGCAGGCCTACCCGGTCTCGGGCAACC
TGCGGGCGCCGAACGGCGCCGCCCTGACGGCTGCGGCCGTGGCCGGCCTCGGGCTGATCTACCAGCCGACCTTTCTGGTG
GCGCAGGCCCTGCGGGCGGGAGCGCTCGTCCCCCTCGATTTCGGCACCCCCTCCCCGGTTCTGCCGATCCACGCCCTGAT
GCCGCCGGGCCGGCGCCCGGCCAAGACGCGCGCCTTCGTGGAGTTTCTGGTGCAGCGGTTCGCGGGCGAGCCCGCCTGGG
AGCGGGATCTGCCGGAGGCGGTGCGATGA

Upstream 100 bases:

>100_bases
CGGTCGCGGTCTTTGCGGTGACCGGACCATGCCTTTCTCAGGCGATTGCGATAATTCGCGTTCGCTGCCATTCACCTCAC
CCTGAGAGAGTGAGGTTGCC

Downstream 100 bases:

>100_bases
TGAGGTCATCGGCCGGTGATCACGCCGCATCTGCCGCGATCCGCTGCAGCCGCTCCGCCTCGGTCGGGCAGAGATCGACC
ATTTTCATGACGCCTGACCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MLDRVTGMQVFCRVAALGSFSAAGRALGLSQTGVTKHVAALEARLGTRLLHRTTRRLTLTETGRTYLEACERILAEIDDA
EAAVGAEGVEAHGTLRLNVPLSFGVREIAPALAAFSAAHPALTIELGLNDRRVDLIEEGWDLAVRIGTLADSGLIARRLT
SSRLVACGAPAYFERHGTPRRPEELKNHNCLGYTLSDSSGWHFGEQAYPVSGNLRAPNGAALTAAAVAGLGLIYQPTFLV
AQALRAGALVPLDFGTPSPVLPIHALMPPGRRPAKTRAFVEFLVQRFAGEPAWERDLPEAVR

Sequences:

>Translated_302_residues
MLDRVTGMQVFCRVAALGSFSAAGRALGLSQTGVTKHVAALEARLGTRLLHRTTRRLTLTETGRTYLEACERILAEIDDA
EAAVGAEGVEAHGTLRLNVPLSFGVREIAPALAAFSAAHPALTIELGLNDRRVDLIEEGWDLAVRIGTLADSGLIARRLT
SSRLVACGAPAYFERHGTPRRPEELKNHNCLGYTLSDSSGWHFGEQAYPVSGNLRAPNGAALTAAAVAGLGLIYQPTFLV
AQALRAGALVPLDFGTPSPVLPIHALMPPGRRPAKTRAFVEFLVQRFAGEPAWERDLPEAVR
>Mature_302_residues
MLDRVTGMQVFCRVAALGSFSAAGRALGLSQTGVTKHVAALEARLGTRLLHRTTRRLTLTETGRTYLEACERILAEIDDA
EAAVGAEGVEAHGTLRLNVPLSFGVREIAPALAAFSAAHPALTIELGLNDRRVDLIEEGWDLAVRIGTLADSGLIARRLT
SSRLVACGAPAYFERHGTPRRPEELKNHNCLGYTLSDSSGWHFGEQAYPVSGNLRAPNGAALTAAAVAGLGLIYQPTFLV
AQALRAGALVPLDFGTPSPVLPIHALMPPGRRPAKTRAFVEFLVQRFAGEPAWERDLPEAVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=33.5593220338983, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=29.3918918918919, Blast_Score=141, Evalue=6e-35,
Organism=Escherichia coli, GI1786401, Length=290, Percent_Identity=31.7241379310345, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1789440, Length=295, Percent_Identity=30.1694915254237, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI87081978, Length=292, Percent_Identity=32.5342465753425, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1787128, Length=287, Percent_Identity=28.5714285714286, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=30.3448275862069, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789173, Length=258, Percent_Identity=25.5813953488372, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790011, Length=265, Percent_Identity=24.5283018867925, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788706, Length=293, Percent_Identity=26.2798634812287, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1786448, Length=234, Percent_Identity=27.3504273504274, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI157672245, Length=126, Percent_Identity=32.5396825396825, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32312; Mature: 32312

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDRVTGMQVFCRVAALGSFSAAGRALGLSQTGVTKHVAALEARLGTRLLHRTTRRLTLT
CCCCHHHHHHHHHHHHHCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEE
ETGRTYLEACERILAEIDDAEAAVGAEGVEAHGTLRLNVPLSFGVREIAPALAAFSAAHP
CCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEECCHHCCHHHHHHHHHHHHCCCC
ALTIELGLNDRRVDLIEEGWDLAVRIGTLADSGLIARRLTSSRLVACGAPAYFERHGTPR
EEEEEECCCCCCHHHHHCCCCEEEEEECCCCCCHHHHHHCCCCEEEECCCHHHHHCCCCC
RPEELKNHNCLGYTLSDSSGWHFGEQAYPVSGNLRAPNGAALTAAAVAGLGLIYQPTFLV
CHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHH
AQALRAGALVPLDFGTPSPVLPIHALMPPGRRPAKTRAFVEFLVQRFAGEPAWERDLPEA
HHHHHCCCEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHH
VR
CC
>Mature Secondary Structure
MLDRVTGMQVFCRVAALGSFSAAGRALGLSQTGVTKHVAALEARLGTRLLHRTTRRLTLT
CCCCHHHHHHHHHHHHHCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEE
ETGRTYLEACERILAEIDDAEAAVGAEGVEAHGTLRLNVPLSFGVREIAPALAAFSAAHP
CCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEECCHHCCHHHHHHHHHHHHCCCC
ALTIELGLNDRRVDLIEEGWDLAVRIGTLADSGLIARRLTSSRLVACGAPAYFERHGTPR
EEEEEECCCCCCHHHHHCCCCEEEEEECCCCCCHHHHHHCCCCEEEECCCHHHHHCCCCC
RPEELKNHNCLGYTLSDSSGWHFGEQAYPVSGNLRAPNGAALTAAAVAGLGLIYQPTFLV
CHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHH
AQALRAGALVPLDFGTPSPVLPIHALMPPGRRPAKTRAFVEFLVQRFAGEPAWERDLPEA
HHHHHCCCEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHH
VR
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]