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The map label for this gene is yjfH [C]

Identifier: 218531683

GI number: 218531683

Start: 3964778

End: 3965587

Strand: Reverse

Name: yjfH [C]

Synonym: Mchl_3752

Alternate gene names: 218531683

Gene position: 3965587-3964778 (Counterclockwise)

Preceding gene: 218531684

Following gene: 218531682

Centisome position: 68.63

GC content: 73.7

Gene sequence:

>810_bases
TTGCCCGAGCCAATCACTATCGACGATCCGGACGACCCGCGCCTCTCCGCCTACCGGGCCGTGCGCGAGCGCGACCTTGT
GGGCCGGCAGGGCCGCTTCATCGTCGAGGGCGAGGTGACCCTGCGGCTGCTATTCTCGGGCAGCGCCCGCTTCGCCGCGG
AATCGGTGCTGCTGGCGCCCGAGCGCTGGCCGGGCTTTGCGGATCTGCTGCGTGGGGATGGGCCGCCGGTCTATCTCGCC
GGCAAGGACGTGATGAGCGCGGTGGCCGGCTTTCCGATCCATCGCGGCGTGCTGGCGGTGGGGCTGCGCGGCGCGGAGCC
GTCACCCGAGTCCCTGGTCCCGCCCGCCCCTGCCCCGGCCCTCGTCGTCGGGCTCGTCGGGTTGACCAACCACGACAATG
TCGGCGGCCTGTTTCGCAACGCCGCCGCCTTCGGCGCCGATGCGGTCTGGCTCGATGCGGAGACCTGCGATCCGCTCTAC
CGCAAGGCGATCCGCGTCTCGGCCGGCGCGGCGCTGACCGTGCCCTCCGCCCGCGCGCCGAGCGGGGCGGCGCTGCTCGA
CCTCGCCGAACGCCATGCCCTGACGCCGCTGGCGCTGACCCCCAGCGGGAGCGAGACGCTCGACGCCTTGGAGCCGCCGG
CCCGCACGCTGCTGCTGCTCGGCACAGAGGGGCCCGGCCTGCCTGAATCGCTGATGGTCCGCGCCCGCCGCGTCCGCATC
GCCATGGCGCCGGGCTTCGACTCGCTCAACGTCGCGACGGCTGGCGCAATCGCGCTGCATCATCTGGCCGGACGGCGGCT
CGCAGGCTGA

Upstream 100 bases:

>100_bases
CGCCATGCGTATGGGCGGCGGCCGCGCCTAAAGCATCGTCCCGAAAGGTGGTTGCCGGCTTTCGGGACAGGACGATGCGA
TAGCGAAAGTCGACCCTCTT

Downstream 100 bases:

>100_bases
AGCCGAATCCTCGGGGCGCGCCTGCGGCCTCCCGCCTGTGGACGGCTCAGGCCCTCGCGGACCCCGGCCGGCCCGCGCAT
GTTAGAAGCAGCGGGCGCCA

Product: tRNA/rRNA methyltransferase (SpoU)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MPEPITIDDPDDPRLSAYRAVRERDLVGRQGRFIVEGEVTLRLLFSGSARFAAESVLLAPERWPGFADLLRGDGPPVYLA
GKDVMSAVAGFPIHRGVLAVGLRGAEPSPESLVPPAPAPALVVGLVGLTNHDNVGGLFRNAAAFGADAVWLDAETCDPLY
RKAIRVSAGAALTVPSARAPSGAALLDLAERHALTPLALTPSGSETLDALEPPARTLLLLGTEGPGLPESLMVRARRVRI
AMAPGFDSLNVATAGAIALHHLAGRRLAG

Sequences:

>Translated_269_residues
MPEPITIDDPDDPRLSAYRAVRERDLVGRQGRFIVEGEVTLRLLFSGSARFAAESVLLAPERWPGFADLLRGDGPPVYLA
GKDVMSAVAGFPIHRGVLAVGLRGAEPSPESLVPPAPAPALVVGLVGLTNHDNVGGLFRNAAAFGADAVWLDAETCDPLY
RKAIRVSAGAALTVPSARAPSGAALLDLAERHALTPLALTPSGSETLDALEPPARTLLLLGTEGPGLPESLMVRARRVRI
AMAPGFDSLNVATAGAIALHHLAGRRLAG
>Mature_268_residues
PEPITIDDPDDPRLSAYRAVRERDLVGRQGRFIVEGEVTLRLLFSGSARFAAESVLLAPERWPGFADLLRGDGPPVYLAG
KDVMSAVAGFPIHRGVLAVGLRGAEPSPESLVPPAPAPALVVGLVGLTNHDNVGGLFRNAAAFGADAVWLDAETCDPLYR
KAIRVSAGAALTVPSARAPSGAALLDLAERHALTPLALTPSGSETLDALEPPARTLLLLGTEGPGLPESLMVRARRVRIA
MAPGFDSLNVATAGAIALHHLAGRRLAG

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 28025; Mature: 27893

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEPITIDDPDDPRLSAYRAVRERDLVGRQGRFIVEGEVTLRLLFSGSARFAAESVLLAP
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCEEEEEEECCCCCHHHHEEEECC
ERWPGFADLLRGDGPPVYLAGKDVMSAVAGFPIHRGVLAVGLRGAEPSPESLVPPAPAPA
CCCCCHHHHHCCCCCEEEEECHHHHHHHHCCCHHCCCEEEEECCCCCCCCCCCCCCCCHH
LVVGLVGLTNHDNVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRVSAGAALTVPSARAP
HHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCC
SGAALLDLAERHALTPLALTPSGSETLDALEPPARTLLLLGTEGPGLPESLMVRARRVRI
CCHHHHHHHHHHCCCCEEECCCCCCHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHEEE
AMAPGFDSLNVATAGAIALHHLAGRRLAG
EECCCCCCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PEPITIDDPDDPRLSAYRAVRERDLVGRQGRFIVEGEVTLRLLFSGSARFAAESVLLAP
CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCEEEEEEECCCCCHHHHEEEECC
ERWPGFADLLRGDGPPVYLAGKDVMSAVAGFPIHRGVLAVGLRGAEPSPESLVPPAPAPA
CCCCCHHHHHCCCCCEEEEECHHHHHHHHCCCHHCCCEEEEECCCCCCCCCCCCCCCCHH
LVVGLVGLTNHDNVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRVSAGAALTVPSARAP
HHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCC
SGAALLDLAERHALTPLALTPSGSETLDALEPPARTLLLLGTEGPGLPESLMVRARRVRI
CCHHHHHHHHHHCCCCEEECCCCCCHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHEEE
AMAPGFDSLNVATAGAIALHHLAGRRLAG
EECCCCCCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]