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The map label for this gene is carC [H]

Identifier: 218531681

GI number: 218531681

Start: 3961460

End: 3963052

Strand: Reverse

Name: carC [H]

Synonym: Mchl_3750

Alternate gene names: 218531681

Gene position: 3963052-3961460 (Counterclockwise)

Preceding gene: 218531682

Following gene: 218531680

Centisome position: 68.59

GC content: 67.04

Gene sequence:

>1593_bases
TTGCTGCAGTCGCGGGAAGGTTTGCGTACCCTGTCGGGCCGCCGCACAATCGTCGTCGGGGCCGGCCCCGGCGGGCTTGC
AACGGCGCTGCTCCTGGCCAAGGCCGGACTGCACGTCACGCTGATCGAGAAGGACGCCCAAGTCGGCGGGCGCACCAAGA
CCGTGGAGGCGCCGGGCGGCTACCGCTTCGACATCGGCCCGACCTTCTTCCTCTATCCGCAGATCCTCGCCGACATCTTC
GAATCCTGCGGCGAGCGTCTGGAGGACCATGTCCGGCTGGAGCGGCTCGACCCGCAATACAATCTCGTCTTCGAGGGTGA
GGGCGGCATTTCGGGGCAGATCCGCGCCACCGGCGACGTGCCGCGGCTGAAGGCCGAGATCGCCCGCCTCGCCCCCGCCG
ATGCCGGGAACGTCGAAAAATTCTTCGAAGAGAACCGGACCAAGCTGAACTACTTCAAGCCGGTGCTGGAACAGCCCTTC
GACAACATCCTGTCGATGGCGAGCCCGGCGATGCTGGCCGCCCTCCCCCATCTCCATCCCGGCCGCAGCGTGGACCGGGA
TCTCAAGCGCTATTTCGCCGACCCGCGGGTGCGCCTCGCCTTCTCGTTCCAGACCAAATATCTCGGGATGAGCCCCTTCC
GCTGCCCGAGCCTGTTCACGATCCTCTCGTTCCTCGAATACGAGCACGGGGTCTACCACCCGGTCGGCGGCTGCGGCGCG
GTCTCGGAGGCGATGGCGGGGCTGGCCCGCCGCATGGGCGTCGACATCCGCCTCGGGCAATCGGTCGAGCGGATCCTGTT
CGAGGGCAAGCGCGCCACCGGCGTGGTCGTCGACGGCGAGACGCTGAAGGCCGATGCGGTCGTCGTGAACGGCGACTTCG
CCAAGGTGATCCGCGATCTCGTGCCGGAGGAGCGGCGCCCGCGTTGGCGTGACGCCAAGATCGGCAAGGCGCGGCTCTCC
TGCTCGACCTACATGCTCTATCTCGGCATCGAGGGTAAAATGCCCGAGAGCCTGGGCCACCACACCATCCTGCTGGCCAA
GGAATACGAGCGCAACATCAAGGAGATCACCGGCGGCACGCTGCCGATGGAGCCTTCGATCTACGTGCAGCATGCCGGCT
TCACCGATGGCGGTATGGCGCCGCCCGGCCACACCGCCCTCTACGTGCTGGTGCCGGTGCCGAACCTGAAGGCGGGCATC
GATTGGGAGACGGTCGGCCCGACCTACCGCAAGCTGATTCTGGAGCGCTTGAAGCTCCTCGGCCTTCCCGACATCGAGAG
CCGCATCCGTTACGAGCGCGTGGTCGATCCCCGCGACTGGCGCGACGAGTTCGCGGTGCATGAGGGCGCGACCTTCAACC
TCGCCCACGATCTCATGCAGATGCTGTGGTTCCGCCCCCATAACCGCTTCGGGCCGGGGCTCTATCTCGTCGGCGGCGGC
ACCCATCCAGGCTCCGGTCTTCCGGTGATCTACGAGGGTGCGCGCATCTCGGCCCGGCTCCTGATCGAGGATCTCGCCAA
GGAGAAGGCCCCCGCGATCCTGGCGGACCTGCCGACGACTTCGCCGCTCGCCACGCAGGGCGATCCGAGTTGA

Upstream 100 bases:

>100_bases
CTGTCGAGACCGGGCGGCACGCGACAATCCGTGCCTCTTGCCCCTCGCCCGCTTCCGGCCAAGATTGCGCCGACGATGTC
AGGTTGGGAGTCTTGGGGCG

Downstream 100 bases:

>100_bases
TGCGGGCCGCGTTTTTCGCGGGCCTTGCCGTGCTGGCTGCGCTGACGGGCCCGGCGCGGGCGGCAGGCCTGGAGGTGATC
GTCGAGGGGGCCGAGCCGGG

Product: phytoene desaturase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 530; Mature: 530

Protein sequence:

>530_residues
MLQSREGLRTLSGRRTIVVGAGPGGLATALLLAKAGLHVTLIEKDAQVGGRTKTVEAPGGYRFDIGPTFFLYPQILADIF
ESCGERLEDHVRLERLDPQYNLVFEGEGGISGQIRATGDVPRLKAEIARLAPADAGNVEKFFEENRTKLNYFKPVLEQPF
DNILSMASPAMLAALPHLHPGRSVDRDLKRYFADPRVRLAFSFQTKYLGMSPFRCPSLFTILSFLEYEHGVYHPVGGCGA
VSEAMAGLARRMGVDIRLGQSVERILFEGKRATGVVVDGETLKADAVVVNGDFAKVIRDLVPEERRPRWRDAKIGKARLS
CSTYMLYLGIEGKMPESLGHHTILLAKEYERNIKEITGGTLPMEPSIYVQHAGFTDGGMAPPGHTALYVLVPVPNLKAGI
DWETVGPTYRKLILERLKLLGLPDIESRIRYERVVDPRDWRDEFAVHEGATFNLAHDLMQMLWFRPHNRFGPGLYLVGGG
THPGSGLPVIYEGARISARLLIEDLAKEKAPAILADLPTTSPLATQGDPS

Sequences:

>Translated_530_residues
MLQSREGLRTLSGRRTIVVGAGPGGLATALLLAKAGLHVTLIEKDAQVGGRTKTVEAPGGYRFDIGPTFFLYPQILADIF
ESCGERLEDHVRLERLDPQYNLVFEGEGGISGQIRATGDVPRLKAEIARLAPADAGNVEKFFEENRTKLNYFKPVLEQPF
DNILSMASPAMLAALPHLHPGRSVDRDLKRYFADPRVRLAFSFQTKYLGMSPFRCPSLFTILSFLEYEHGVYHPVGGCGA
VSEAMAGLARRMGVDIRLGQSVERILFEGKRATGVVVDGETLKADAVVVNGDFAKVIRDLVPEERRPRWRDAKIGKARLS
CSTYMLYLGIEGKMPESLGHHTILLAKEYERNIKEITGGTLPMEPSIYVQHAGFTDGGMAPPGHTALYVLVPVPNLKAGI
DWETVGPTYRKLILERLKLLGLPDIESRIRYERVVDPRDWRDEFAVHEGATFNLAHDLMQMLWFRPHNRFGPGLYLVGGG
THPGSGLPVIYEGARISARLLIEDLAKEKAPAILADLPTTSPLATQGDPS
>Mature_530_residues
MLQSREGLRTLSGRRTIVVGAGPGGLATALLLAKAGLHVTLIEKDAQVGGRTKTVEAPGGYRFDIGPTFFLYPQILADIF
ESCGERLEDHVRLERLDPQYNLVFEGEGGISGQIRATGDVPRLKAEIARLAPADAGNVEKFFEENRTKLNYFKPVLEQPF
DNILSMASPAMLAALPHLHPGRSVDRDLKRYFADPRVRLAFSFQTKYLGMSPFRCPSLFTILSFLEYEHGVYHPVGGCGA
VSEAMAGLARRMGVDIRLGQSVERILFEGKRATGVVVDGETLKADAVVVNGDFAKVIRDLVPEERRPRWRDAKIGKARLS
CSTYMLYLGIEGKMPESLGHHTILLAKEYERNIKEITGGTLPMEPSIYVQHAGFTDGGMAPPGHTALYVLVPVPNLKAGI
DWETVGPTYRKLILERLKLLGLPDIESRIRYERVVDPRDWRDEFAVHEGATFNLAHDLMQMLWFRPHNRFGPGLYLVGGG
THPGSGLPVIYEGARISARLLIEDLAKEKAPAILADLPTTSPLATQGDPS

Specific function: This enzyme converts phytoene into lycopene via the intermediaries of phytofluene, zeta-carotene and neurosporene by the introduction of four double bonds [H]

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR008150
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: 1.14.99.-

Molecular weight: Translated: 58415; Mature: 58415

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: PS00982 PHYTOENE_DH

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQSREGLRTLSGRRTIVVGAGPGGLATALLLAKAGLHVTLIEKDAQVGGRTKTVEAPGG
CCCCCCCHHHHCCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCC
YRFDIGPTFFLYPQILADIFESCGERLEDHVRLERLDPQYNLVFEGEGGISGQIRATGDV
EEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEECCCC
PRLKAEIARLAPADAGNVEKFFEENRTKLNYFKPVLEQPFDNILSMASPAMLAALPHLHP
HHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHCHHHHHHHHCCCHHHHHCCCCCC
GRSVDRDLKRYFADPRVRLAFSFQTKYLGMSPFRCPSLFTILSFLEYEHGVYHPVGGCGA
CCCHHHHHHHHHCCCCEEEEEEEEEHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHH
VSEAMAGLARRMGVDIRLGQSVERILFEGKRATGVVVDGETLKADAVVVNGDFAKVIRDL
HHHHHHHHHHHHCCCEEECHHHHHHHHCCCCCCEEEECCCEEEECEEEECCCHHHHHHHH
VPEERRPRWRDAKIGKARLSCSTYMLYLGIEGKMPESLGHHTILLAKEYERNIKEITGGT
CCHHCCCCCCCCCCCHHHEEEEEEEEEEEECCCCCHHCCCEEEEEEHHHHHHHHHHCCCC
LPMEPSIYVQHAGFTDGGMAPPGHTALYVLVPVPNLKAGIDWETVGPTYRKLILERLKLL
CCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC
GLPDIESRIRYERVVDPRDWRDEFAVHEGATFNLAHDLMQMLWFRPHNRFGPGLYLVGGG
CCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC
THPGSGLPVIYEGARISARLLIEDLAKEKAPAILADLPTTSPLATQGDPS
CCCCCCCCEEEECCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MLQSREGLRTLSGRRTIVVGAGPGGLATALLLAKAGLHVTLIEKDAQVGGRTKTVEAPGG
CCCCCCCHHHHCCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCC
YRFDIGPTFFLYPQILADIFESCGERLEDHVRLERLDPQYNLVFEGEGGISGQIRATGDV
EEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEECCCC
PRLKAEIARLAPADAGNVEKFFEENRTKLNYFKPVLEQPFDNILSMASPAMLAALPHLHP
HHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHCHHHHHHHHCCCHHHHHCCCCCC
GRSVDRDLKRYFADPRVRLAFSFQTKYLGMSPFRCPSLFTILSFLEYEHGVYHPVGGCGA
CCCHHHHHHHHHCCCCEEEEEEEEEHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHH
VSEAMAGLARRMGVDIRLGQSVERILFEGKRATGVVVDGETLKADAVVVNGDFAKVIRDL
HHHHHHHHHHHHCCCEEECHHHHHHHHCCCCCCEEEECCCEEEECEEEECCCHHHHHHHH
VPEERRPRWRDAKIGKARLSCSTYMLYLGIEGKMPESLGHHTILLAKEYERNIKEITGGT
CCHHCCCCCCCCCCCHHHEEEEEEEEEEEECCCCCHHCCCEEEEEEHHHHHHHHHHCCCC
LPMEPSIYVQHAGFTDGGMAPPGHTALYVLVPVPNLKAGIDWETVGPTYRKLILERLKLL
CCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC
GLPDIESRIRYERVVDPRDWRDEFAVHEGATFNLAHDLMQMLWFRPHNRFGPGLYLVGGG
CCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC
THPGSGLPVIYEGARISARLLIEDLAKEKAPAILADLPTTSPLATQGDPS
CCCCCCCCEEEECCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8467787 [H]