Click here to switch to the map view.

The map label for this gene is 218531581

Identifier: 218531581

GI number: 218531581

Start: 3841568

End: 3841963

Strand: Reverse

Name: 218531581

Synonym: Mchl_3649

Alternate gene names: NA

Gene position: 3841963-3841568 (Counterclockwise)

Preceding gene: 218531582

Following gene: 218531576

Centisome position: 66.49

GC content: 64.65

Gene sequence:

>396_bases
ATGCCATCTCCGTTGAGCCGAGGTGGCGAATCACAGAGGGTAAGAGATCTTCCTCGTTCCCCCGAGGCCGCCTTGACGGC
GTTCGTCTATATGCTGCGCTGTGCCGACGGCAGTTACTATGTCGGCTCGGCCCGCGGCGACTCCCTTGATGGGCGGCTGG
CCGAGCATCAGGCCGGAACGCATGCTGGCTACACCTATCGCCGCAGACCGGTGACGCTGGTCTACGCCGAGTGGTTCGAC
CGCATCACCGATGCCATTGCGATGGAGCGGCGGATCAAGGGCTGGAGTCGCGCCAAGAAGGAAGCGCTCATCGCCGAGGA
TTGGGACAGGGTGCAGTTCCTGGCGAAGCGCCCGTCTGCGAGGGTCGGTCTCTCCCACCCGCCCCCCTCATCCTGA

Upstream 100 bases:

>100_bases
GCACGGGCATTCCGTGCCGGCGGAGTAGCGGGAGGGAGAAGCGGTGCGCGTGCTTCGAGGCACGCGTGCCGCGTGCGCCT
CAGCATGAGGAGCGTGGTGG

Downstream 100 bases:

>100_bases
GGTGCCGCGAAGCGGCCTCGAAGGATCCTCCAGGGACCAAGACGGATTTGGCGCCCTCTCAGCGCTTCAGCACCCGCCGC
GCGCCATATCCGGCGGCGGC

Product: excinuclease ABC C subunit domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MPSPLSRGGESQRVRDLPRSPEAALTAFVYMLRCADGSYYVGSARGDSLDGRLAEHQAGTHAGYTYRRRPVTLVYAEWFD
RITDAIAMERRIKGWSRAKKEALIAEDWDRVQFLAKRPSARVGLSHPPPSS

Sequences:

>Translated_131_residues
MPSPLSRGGESQRVRDLPRSPEAALTAFVYMLRCADGSYYVGSARGDSLDGRLAEHQAGTHAGYTYRRRPVTLVYAEWFD
RITDAIAMERRIKGWSRAKKEALIAEDWDRVQFLAKRPSARVGLSHPPPSS
>Mature_130_residues
PSPLSRGGESQRVRDLPRSPEAALTAFVYMLRCADGSYYVGSARGDSLDGRLAEHQAGTHAGYTYRRRPVTLVYAEWFDR
ITDAIAMERRIKGWSRAKKEALIAEDWDRVQFLAKRPSARVGLSHPPPSS

Specific function: Unknown

COG id: COG2827

COG function: function code L; Predicted endonuclease containing a URI domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0213 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000305 [H]

Pfam domain/function: PF01541 GIY-YIG [H]

EC number: NA

Molecular weight: Translated: 14693; Mature: 14562

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSPLSRGGESQRVRDLPRSPEAALTAFVYMLRCADGSYYVGSARGDSLDGRLAEHQAGT
CCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHCCCC
HAGYTYRRRPVTLVYAEWFDRITDAIAMERRIKGWSRAKKEALIAEDWDRVQFLAKRPSA
CCCCEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RVGLSHPPPSS
CCCCCCCCCCC
>Mature Secondary Structure 
PSPLSRGGESQRVRDLPRSPEAALTAFVYMLRCADGSYYVGSARGDSLDGRLAEHQAGT
CCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHCCCC
HAGYTYRRRPVTLVYAEWFDRITDAIAMERRIKGWSRAKKEALIAEDWDRVQFLAKRPSA
CCCCEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RVGLSHPPPSS
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA