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The map label for this gene is yqgF [C]

Identifier: 218531575

GI number: 218531575

Start: 3837774

End: 3838271

Strand: Reverse

Name: yqgF [C]

Synonym: Mchl_3643

Alternate gene names: 218531575

Gene position: 3838271-3837774 (Counterclockwise)

Preceding gene: 218531576

Following gene: 218531566

Centisome position: 66.43

GC content: 69.48

Gene sequence:

>498_bases
GTGAACCGGGAGGAGATGGCGGCCTTCGCCGAAGCCTCGGCCGGCGCGCCGCGGCTGATCGGGCTCGACCTCGGCACCAA
GACCATCGGAATTGCCCTGTCCGATGTCGGCCGGCAGATCGCCTCGCCGCTGGAGACGATCCGGCGGGTGAAGTTCACGC
CCGACGTGGCACGGATCGTGTCACTCTGCGCGACGCACGCCGTCGGCGGCCTCGTGATCGGCCTGCCGCTCAACATGGAC
GGCTCCGAAGGCCCCCGTGCCCAATCGAGCCGGAGCTTCGCCCGCAACCTCAAGCCGCTCTTGCCGCTGCCGGTCCTGTT
CTTCGACGAGCGCCTCTCCACCGCCGCCGTCACCCGCACGCTGATCGAAGCCGACGCCTCGCGGGCGCGTCGCGGCGAAC
TCGTGGATAAGCTCGCCGCCGCCTACATCCTGCAAAGCTGCCTCGACGTGATGGGCGGGATGTTTTCGGGCGCGGCCGAG
GAGGCGGACGGGTTTTAA

Upstream 100 bases:

>100_bases
TCGAGATCTTGCACATCCTCGGCGACGGGGAAGGTCCGCTGCCCGCGACCTTCGTCGGCGACGACGCGGCAGCCCTGGAA
CAGCTCGGAGCGACGGATTC

Downstream 100 bases:

>100_bases
CCCCGCGTCACCCGCGCCACGATGACCTCCCGTTCCCGGCGCGTCACCGACAGCCGCTCGCGGGCGGCCGCGAGAATCTC
TGGACCCGCGGTTTCGGGGC

Product: Holliday junction resolvase YqgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MNREEMAAFAEASAGAPRLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVSLCATHAVGGLVIGLPLNMD
GSEGPRAQSSRSFARNLKPLLPLPVLFFDERLSTAAVTRTLIEADASRARRGELVDKLAAAYILQSCLDVMGGMFSGAAE
EADGF

Sequences:

>Translated_165_residues
MNREEMAAFAEASAGAPRLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVSLCATHAVGGLVIGLPLNMD
GSEGPRAQSSRSFARNLKPLLPLPVLFFDERLSTAAVTRTLIEADASRARRGELVDKLAAAYILQSCLDVMGGMFSGAAE
EADGF
>Mature_165_residues
MNREEMAAFAEASAGAPRLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIVSLCATHAVGGLVIGLPLNMD
GSEGPRAQSSRSFARNLKPLLPLPVLFFDERLSTAAVTRTLIEADASRARRGELVDKLAAAYILQSCLDVMGGMFSGAAE
EADGF

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=131, Percent_Identity=35.8778625954198, Blast_Score=76, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 17429; Mature: 17429

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNREEMAAFAEASAGAPRLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIV
CCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
SLCATHAVGGLVIGLPLNMDGSEGPRAQSSRSFARNLKPLLPLPVLFFDERLSTAAVTRT
HHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
LIEADASRARRGELVDKLAAAYILQSCLDVMGGMFSGAAEEADGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNREEMAAFAEASAGAPRLIGLDLGTKTIGIALSDVGRQIASPLETIRRVKFTPDVARIV
CCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
SLCATHAVGGLVIGLPLNMDGSEGPRAQSSRSFARNLKPLLPLPVLFFDERLSTAAVTRT
HHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
LIEADASRARRGELVDKLAAAYILQSCLDVMGGMFSGAAEEADGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA