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The map label for this gene is sodB [H]

Identifier: 218531553

GI number: 218531553

Start: 3813526

End: 3814125

Strand: Reverse

Name: sodB [H]

Synonym: Mchl_3621

Alternate gene names: 218531553

Gene position: 3814125-3813526 (Counterclockwise)

Preceding gene: 218531555

Following gene: 218531552

Centisome position: 66.01

GC content: 63.5

Gene sequence:

>600_bases
ATGACGTTCACCCTGCCCGAGCTGCCCTACGCCTACGACGCGCTGGGGCCCTACATGTCGAAGGAAACCCTCGAGTTTCA
CCACGACAAGCACCACAAGGCCTATGTCGACACCGGCAACAAGCTGCTCGAAGGCACCGACCTCGCCGGCAAGAGCGTCG
AGGAGATCGTCAAGGCGAGCTACAACACCAATCAGGCGCTCTTCAACAACGCCGGCCAGCACTACAACCACCTCCACTTC
TGGAACTGGATGAAGCCCAACGGTGGCGGTCAGCCCCCGGCGGCGCTGGCTCAGAAGATCGACGAGGATCTCGGCGGCTA
CGAGAAGTTCAAGGCCGACTTCATCCAGGCCGGCGTCGGCCAGTTCGGCTCCGGCTGGGCCTGGCTCGCGGTCAAGGACG
GCAAGCTCGCCATCCTGAAGACCCCGAACGGCGAGAACCCGCTGGTCCACGGCGCGACCCCGATCCTCGGCGTCGACGTG
TGGGAGCACTCCTACTACATCGACTACCGCAACCGCCGCCCCGACTACCTCAAGGCGTTCATCGAGAACCTCGTGAACTG
GGAGTACGTCGAGAAGCTGTACGGCGAGGCCAAGGCCTGA

Upstream 100 bases:

>100_bases
ACTTACCTACCCGCGCGTCACCTCGCCGGCCGCGCGCTTCGAACTCCTTGCGCGCTTCGCCTCCGCTTCCCGCGAGACCC
GGACAACCTAGGAGACACGC

Downstream 100 bases:

>100_bases
TCCGCTTGGAGGCTTGATGCCGCCGCCCCGTTTACCGACGGGGCGGCTTTTTCATGCGCGGCGTGCCCGTGCGGTCATTG
TCCTGCCGTGTCGCGGCGGC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MTFTLPELPYAYDALGPYMSKETLEFHHDKHHKAYVDTGNKLLEGTDLAGKSVEEIVKASYNTNQALFNNAGQHYNHLHF
WNWMKPNGGGQPPAALAQKIDEDLGGYEKFKADFIQAGVGQFGSGWAWLAVKDGKLAILKTPNGENPLVHGATPILGVDV
WEHSYYIDYRNRRPDYLKAFIENLVNWEYVEKLYGEAKA

Sequences:

>Translated_199_residues
MTFTLPELPYAYDALGPYMSKETLEFHHDKHHKAYVDTGNKLLEGTDLAGKSVEEIVKASYNTNQALFNNAGQHYNHLHF
WNWMKPNGGGQPPAALAQKIDEDLGGYEKFKADFIQAGVGQFGSGWAWLAVKDGKLAILKTPNGENPLVHGATPILGVDV
WEHSYYIDYRNRRPDYLKAFIENLVNWEYVEKLYGEAKA
>Mature_198_residues
TFTLPELPYAYDALGPYMSKETLEFHHDKHHKAYVDTGNKLLEGTDLAGKSVEEIVKASYNTNQALFNNAGQHYNHLHFW
NWMKPNGGGQPPAALAQKIDEDLGGYEKFKADFIQAGVGQFGSGWAWLAVKDGKLAILKTPNGENPLVHGATPILGVDVW
EHSYYIDYRNRRPDYLKAFIENLVNWEYVEKLYGEAKA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=199, Percent_Identity=44.2211055276382, Blast_Score=156, Evalue=9e-39,
Organism=Homo sapiens, GI67782305, Length=199, Percent_Identity=44.2211055276382, Blast_Score=156, Evalue=9e-39,
Organism=Homo sapiens, GI67782309, Length=199, Percent_Identity=36.6834170854271, Blast_Score=115, Evalue=2e-26,
Organism=Escherichia coli, GI1787946, Length=193, Percent_Identity=52.3316062176166, Blast_Score=207, Evalue=3e-55,
Organism=Escherichia coli, GI1790342, Length=209, Percent_Identity=44.0191387559809, Blast_Score=173, Evalue=9e-45,
Organism=Caenorhabditis elegans, GI17506561, Length=198, Percent_Identity=36.8686868686869, Blast_Score=127, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI17569479, Length=196, Percent_Identity=35.2040816326531, Blast_Score=123, Evalue=5e-29,
Organism=Saccharomyces cerevisiae, GI6321796, Length=210, Percent_Identity=35.7142857142857, Blast_Score=109, Evalue=3e-25,
Organism=Drosophila melanogaster, GI17136812, Length=199, Percent_Identity=40.2010050251256, Blast_Score=133, Evalue=6e-32,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22490; Mature: 22359

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFTLPELPYAYDALGPYMSKETLEFHHDKHHKAYVDTGNKLLEGTDLAGKSVEEIVKAS
CCCCCCCCCCHHHHHCCHHCHHHHHHHCCCCCEEEECCCCCEECCCCCCCHHHHHHHHHC
YNTNQALFNNAGQHYNHLHFWNWMKPNGGGQPPAALAQKIDEDLGGYEKFKADFIQAGVG
CCCCHHHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCC
QFGSGWAWLAVKDGKLAILKTPNGENPLVHGATPILGVDVWEHSYYIDYRNRRPDYLKAF
CCCCCEEEEEEECCCEEEEECCCCCCCEEECCCCEEEEEEECCEEEEECCCCCHHHHHHH
IENLVNWEYVEKLYGEAKA
HHHHCCHHHHHHHHHCCCC
>Mature Secondary Structure 
TFTLPELPYAYDALGPYMSKETLEFHHDKHHKAYVDTGNKLLEGTDLAGKSVEEIVKAS
CCCCCCCCCHHHHHCCHHCHHHHHHHCCCCCEEEECCCCCEECCCCCCCHHHHHHHHHC
YNTNQALFNNAGQHYNHLHFWNWMKPNGGGQPPAALAQKIDEDLGGYEKFKADFIQAGVG
CCCCHHHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCC
QFGSGWAWLAVKDGKLAILKTPNGENPLVHGATPILGVDVWEHSYYIDYRNRRPDYLKAF
CCCCCEEEEEEECCCEEEEECCCCCCCEEECCCCEEEEEEECCEEEEECCCCCHHHHHHH
IENLVNWEYVEKLYGEAKA
HHHHCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10419947; 11481430 [H]