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The map label for this gene is atpD1 [H]

Identifier: 218711023

GI number: 218711023

Start: 3288287

End: 3289690

Strand: Reverse

Name: atpD1 [H]

Synonym: VS_3152

Alternate gene names: 218711023

Gene position: 3289690-3288287 (Counterclockwise)

Preceding gene: 218711024

Following gene: 218711022

Centisome position: 99.71

GC content: 46.65

Gene sequence:

>1404_bases
ATGGCTACAGGTAAGATCGTACAGATCATCGGTGCGGTAGTCGACGTAGAGTTCCCACAGGGCGAAGTACCTCGTGTATA
CGATGCTCTGAATGTTAATGAAGTGAAAGAGCGTCTAGTTCTTGAAGTTCAGCAACAACTTGGCGGTGGCGTAGTTCGCG
CAATCGTAATGGGTAGCTCTGATGGTTTACGTCGTGGTTTGACAGTTGAAAATACTGGCGCTCCAATCTCAGTACCAGTA
GGTACTAAGACATTGGGTCGTATCATGAATGTCCTAGGTGACGCGATTGATGAGTGTGGCGAGATTGGTGCTGAAGAGCA
TTACGCCATTCACCGTGAAGCTCCAAGCTACGAAGAGCAGTCTAACGAGACAGCTCTTCTAGAAACTGGTGTTAAAGTAA
TCGACTTGATTTGTCCATTCGCTAAGGGTGGTAAAATCGGTCTATTCGGTGGTGCTGGTGTAGGTAAGACCGTTAACATG
ATGGAACTTATCAACAACATCGCACTTCAACACTCAGGCCTATCTGTATTTGCAGGTGTAGGTGAGCGTACTCGTGAAGG
TAACGATTTCTACTTTGAGATGCAGGAAGCTGGTGTTGTAAACATCGAAAAACCTGAAGAATCAAAAGTAGCGATGGTTT
ACGGCCAGATGAACGAGCCACCAGGTAACCGTCTACGTGTTGCACTGACTGGTCTAACAATGGCAGAGCGCTTCCGTGAC
GAAGGTCGTGACGTTCTACTGTTCGTTGATAACATCTACCGTTACACACTAGCAGGTACTGAAGTATCAGCACTTCTAGG
TCGTATGCCTTCTGCGGTAGGTTACCAACCTACACTAGCTGAAGAAATGGGTGTTCTACAAGAGCGTATCACGTCAACTA
AAGCTGGTTCTATCACGTCTGTACAGGCGGTATATGTACCTGCGGATGACTTGACTGACCCGTCTCCAGCAACAACGTTC
GCTCACTTGGATGCAACGGTTGTACTTAACCGTAACATCGCATCTATGGGTCTATACCCAGCGATCGACCCGCTAGATTC
TACTTCACGTCAACTGGATCCATTGGTAGTTGGACAAGAACACTACGACATCGCTCGTGGCGTTCAGTCTACTCTTCAGC
GCTATAAAGAGCTGAAAGATATCATTGCTATCCTAGGTATGGACGAGCTATCTGAAGAAGATAAGCAAGTTGTATCTCGT
GCTCGTAAGATTGAGAAGTTCCTAACTCAGCCTTACCACGTAGCGGAAGTATTTACAGGTGACCCAGGCGTTTACGTACC
TCTTAAAGAGACTCTACGTGGCTTCCAAGGTCTTCTATCTGGTGAATACGATGACATTCCAGAGCAAGCGTTCATGTACT
GTGGTGCAATTGACGAAGCTATCGAGAATGCTAAGAAGCTATAA

Upstream 100 bases:

>100_bases
AAAGCCCGTCAATCGGCGATTACACAAGAACTTTCTGAGATCGTTTCAGGCGCAGCTGCGGTTTAAGCTTAGGTAAAACT
AAATAGTTAGAGGATTAACG

Downstream 100 bases:

>100_bases
GGCTAACTAGGAGGCGATATGGCAGCAATAACCTTTCACCTAGACGTTGTAAGTGCCGAGAAACAAATTTTCTCTGGTCT
TGTTGAGACGTTTCAGGTGA

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta 1; F-ATPase subunit beta 1 [H]

Number of amino acids: Translated: 467; Mature: 466

Protein sequence:

>467_residues
MATGKIVQIIGAVVDVEFPQGEVPRVYDALNVNEVKERLVLEVQQQLGGGVVRAIVMGSSDGLRRGLTVENTGAPISVPV
GTKTLGRIMNVLGDAIDECGEIGAEEHYAIHREAPSYEEQSNETALLETGVKVIDLICPFAKGGKIGLFGGAGVGKTVNM
MELINNIALQHSGLSVFAGVGERTREGNDFYFEMQEAGVVNIEKPEESKVAMVYGQMNEPPGNRLRVALTGLTMAERFRD
EGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKAGSITSVQAVYVPADDLTDPSPATTF
AHLDATVVLNRNIASMGLYPAIDPLDSTSRQLDPLVVGQEHYDIARGVQSTLQRYKELKDIIAILGMDELSEEDKQVVSR
ARKIEKFLTQPYHVAEVFTGDPGVYVPLKETLRGFQGLLSGEYDDIPEQAFMYCGAIDEAIENAKKL

Sequences:

>Translated_467_residues
MATGKIVQIIGAVVDVEFPQGEVPRVYDALNVNEVKERLVLEVQQQLGGGVVRAIVMGSSDGLRRGLTVENTGAPISVPV
GTKTLGRIMNVLGDAIDECGEIGAEEHYAIHREAPSYEEQSNETALLETGVKVIDLICPFAKGGKIGLFGGAGVGKTVNM
MELINNIALQHSGLSVFAGVGERTREGNDFYFEMQEAGVVNIEKPEESKVAMVYGQMNEPPGNRLRVALTGLTMAERFRD
EGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKAGSITSVQAVYVPADDLTDPSPATTF
AHLDATVVLNRNIASMGLYPAIDPLDSTSRQLDPLVVGQEHYDIARGVQSTLQRYKELKDIIAILGMDELSEEDKQVVSR
ARKIEKFLTQPYHVAEVFTGDPGVYVPLKETLRGFQGLLSGEYDDIPEQAFMYCGAIDEAIENAKKL
>Mature_466_residues
ATGKIVQIIGAVVDVEFPQGEVPRVYDALNVNEVKERLVLEVQQQLGGGVVRAIVMGSSDGLRRGLTVENTGAPISVPVG
TKTLGRIMNVLGDAIDECGEIGAEEHYAIHREAPSYEEQSNETALLETGVKVIDLICPFAKGGKIGLFGGAGVGKTVNMM
ELINNIALQHSGLSVFAGVGERTREGNDFYFEMQEAGVVNIEKPEESKVAMVYGQMNEPPGNRLRVALTGLTMAERFRDE
GRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKAGSITSVQAVYVPADDLTDPSPATTFA
HLDATVVLNRNIASMGLYPAIDPLDSTSRQLDPLVVGQEHYDIARGVQSTLQRYKELKDIIAILGMDELSEEDKQVVSRA
RKIEKFLTQPYHVAEVFTGDPGVYVPLKETLRGFQGLLSGEYDDIPEQAFMYCGAIDEAIENAKKL

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=467, Percent_Identity=68.0942184154176, Blast_Score=637, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=303, Percent_Identity=28.3828382838284, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI19913426, Length=399, Percent_Identity=24.5614035087719, Blast_Score=102, Evalue=9e-22,
Organism=Homo sapiens, GI19913428, Length=399, Percent_Identity=24.0601503759398, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI50345984, Length=370, Percent_Identity=23.7837837837838, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI4757810, Length=370, Percent_Identity=23.7837837837838, Blast_Score=95, Evalue=1e-19,
Organism=Escherichia coli, GI1790170, Length=467, Percent_Identity=80.5139186295503, Blast_Score=768, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=324, Percent_Identity=29.0123456790123, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1790172, Length=389, Percent_Identity=24.9357326478149, Blast_Score=108, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI25144756, Length=467, Percent_Identity=65.9528907922912, Blast_Score=614, Evalue=1e-176,
Organism=Caenorhabditis elegans, GI17565854, Length=321, Percent_Identity=28.3489096573209, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17510931, Length=360, Percent_Identity=25.2777777777778, Blast_Score=101, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17570191, Length=417, Percent_Identity=24.220623501199, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71988080, Length=374, Percent_Identity=24.331550802139, Blast_Score=98, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI71988063, Length=374, Percent_Identity=24.331550802139, Blast_Score=97, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI71988074, Length=379, Percent_Identity=22.6912928759894, Blast_Score=73, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6322581, Length=460, Percent_Identity=65.6521739130435, Blast_Score=615, Evalue=1e-177,
Organism=Saccharomyces cerevisiae, GI6319603, Length=412, Percent_Identity=25.4854368932039, Blast_Score=106, Evalue=8e-24,
Organism=Saccharomyces cerevisiae, GI6319370, Length=376, Percent_Identity=25, Blast_Score=91, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6320016, Length=294, Percent_Identity=25.5102040816327, Blast_Score=80, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24638766, Length=465, Percent_Identity=65.8064516129032, Blast_Score=616, Evalue=1e-177,
Organism=Drosophila melanogaster, GI28574560, Length=466, Percent_Identity=62.6609442060086, Blast_Score=578, Evalue=1e-165,
Organism=Drosophila melanogaster, GI24583992, Length=303, Percent_Identity=29.042904290429, Blast_Score=109, Evalue=4e-24,
Organism=Drosophila melanogaster, GI20129479, Length=318, Percent_Identity=27.0440251572327, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24583988, Length=322, Percent_Identity=28.2608695652174, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24583986, Length=322, Percent_Identity=28.2608695652174, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24583984, Length=322, Percent_Identity=28.2608695652174, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24658560, Length=371, Percent_Identity=22.911051212938, Blast_Score=97, Evalue=3e-20,
Organism=Drosophila melanogaster, GI281361666, Length=403, Percent_Identity=24.317617866005, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24646341, Length=403, Percent_Identity=24.317617866005, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI17136796, Length=403, Percent_Identity=24.317617866005, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24638768, Length=91, Percent_Identity=53.8461538461538, Blast_Score=90, Evalue=4e-18,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50715; Mature: 50584

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGKIVQIIGAVVDVEFPQGEVPRVYDALNVNEVKERLVLEVQQQLGGGVVRAIVMGSS
CCCCHHHHHHHHHHEECCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEEECCC
DGLRRGLTVENTGAPISVPVGTKTLGRIMNVLGDAIDECGEIGAEEHYAIHREAPSYEEQ
CCHHCCCEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHC
SNETALLETGVKVIDLICPFAKGGKIGLFGGAGVGKTVNMMELINNIALQHSGLSVFAGV
CCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECC
GERTREGNDFYFEMQEAGVVNIEKPEESKVAMVYGQMNEPPGNRLRVALTGLTMAERFRD
CCCCCCCCCEEEEEECCCEEECCCCCCCCEEEEEECCCCCCCCEEEEEEECHHHHHHHHH
EGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKAGSITS
CCCEEEEEEECCEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEE
VQAVYVPADDLTDPSPATTFAHLDATVVLNRNIASMGLYPAIDPLDSTSRQLDPLVVGQE
EEEEEECCCCCCCCCCCCEEEECCEEEEEECCHHHCCCCCCCCCCCCCHHHCCCEEECCH
HYDIARGVQSTLQRYKELKDIIAILGMDELSEEDKQVVSRARKIEKFLTQPYHVAEVFTG
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
DPGVYVPLKETLRGFQGLLSGEYDDIPEQAFMYCGAIDEAIENAKKL
CCCEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATGKIVQIIGAVVDVEFPQGEVPRVYDALNVNEVKERLVLEVQQQLGGGVVRAIVMGSS
CCCHHHHHHHHHHEECCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEEECCC
DGLRRGLTVENTGAPISVPVGTKTLGRIMNVLGDAIDECGEIGAEEHYAIHREAPSYEEQ
CCHHCCCEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHC
SNETALLETGVKVIDLICPFAKGGKIGLFGGAGVGKTVNMMELINNIALQHSGLSVFAGV
CCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECC
GERTREGNDFYFEMQEAGVVNIEKPEESKVAMVYGQMNEPPGNRLRVALTGLTMAERFRD
CCCCCCCCCEEEEEECCCEEECCCCCCCCEEEEEECCCCCCCCEEEEEEECHHHHHHHHH
EGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKAGSITS
CCCEEEEEEECCEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEE
VQAVYVPADDLTDPSPATTFAHLDATVVLNRNIASMGLYPAIDPLDSTSRQLDPLVVGQE
EEEEEECCCCCCCCCCCCEEEECCEEEEEECCHHHCCCCCCCCCCCCCHHHCCCEEECCH
HYDIARGVQSTLQRYKELKDIIAILGMDELSEEDKQVVSRARKIEKFLTQPYHVAEVFTG
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
DPGVYVPLKETLRGFQGLLSGEYDDIPEQAFMYCGAIDEAIENAKKL
CCCEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA