| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
Click here to switch to the map view.
The map label for this gene is 218711012
Identifier: 218711012
GI number: 218711012
Start: 3274388
End: 3275341
Strand: Direct
Name: 218711012
Synonym: VS_3141
Alternate gene names: NA
Gene position: 3274388-3275341 (Clockwise)
Preceding gene: 218711011
Following gene: 218711014
Centisome position: 99.24
GC content: 45.07
Gene sequence:
>954_bases ATGAAAATAAAAATAACGCTTTTGGCACTGAGCATTGCAACCTCTCCTGCTTTTGCCAAGCTTGCAGACGAACAAGGTTT CAGTGGTGAAATTTCTATTAATACAGGGGTTACCTCTTCCACCTCAAACTTTAATACCGATGCAGATAGCACCATTTCGT CCATTAACCAGAAAGCCTCATCTGAGAGCTCATTTCTTATCGCTCCTTTGGGTAGTATTGCTTACACCTTTGGCGAAAAA TTAAATCACCAGGTATACACAGGTACAACTCGTGATGACGTAGCAACAGGTACTGTGGTGCTTGAATTGGGTTATAAATA CCAACTAGAGTCAGGCATGACCATCGACGCTTCACTTCTGCCGACTGTCATGTCAGGTGAGACTTGGGCCGATCCGTACA ACACCACTTCAGGTCGCACCAAAACGGATGAAACAGGCAATGCCTTTCGTGTGAAACTAAGTAGCATTGCGGGGTCTGCT TTCTCGTTAGACATGGCCTACGCCACCAAAGATGTGGAAGATGATCGGGTTAGAGAAGAATTACAGCGTGATGCCAATAC TTTCTACCTGAAAGGTCAGTACCGTCAACCAATCAACCGCACCATGATGTTAGTACCATCATTGATTTACCAATCAAGGG ATGCCGACGGTAACGCTGAGTCTTACGAACAGTTTGGTGGTGAAGTGAGTCTATTTAGTGGCATAGGCCGCCACCAGTAC GCTCTGACAGCGGGTTATAATCAACGTTCTTACGACGCCAGCAACCCAATCTATAATAAAAAACGCAGCGACGATAATAT CAACCTGTTTGCCGCCTATGAGTATGAGCAATTCATGGATTGGGAAAACTGGTCGTTTATTTCTCTAGCCGGTTATGGTG TCAGCGATTCGAACATTACTTTCTACGATGAGTCGCAATACATCGTCTCAGTCGGCCTGAACTACAAGTTCTAG
Upstream 100 bases:
>100_bases TAGTTCAAAAATATTCATAGATAAACAATCATCCTGAAAACGTTGTGCTTTACTGATATTAATATCCAGTCCTAAGAACT GGTAGGCAAGGAGCCTTTGA
Downstream 100 bases:
>100_bases TTAGGCATCACTGATCGCTAATAACCATTAGTTCATAACAACGAAAGCCTACGTAAAAAGCAGGCTTTCTTGTTTCTATA CCAATCACAGTAAATAAATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 317; Mature: 317
Protein sequence:
>317_residues MKIKITLLALSIATSPAFAKLADEQGFSGEISINTGVTSSTSNFNTDADSTISSINQKASSESSFLIAPLGSIAYTFGEK LNHQVYTGTTRDDVATGTVVLELGYKYQLESGMTIDASLLPTVMSGETWADPYNTTSGRTKTDETGNAFRVKLSSIAGSA FSLDMAYATKDVEDDRVREELQRDANTFYLKGQYRQPINRTMMLVPSLIYQSRDADGNAESYEQFGGEVSLFSGIGRHQY ALTAGYNQRSYDASNPIYNKKRSDDNINLFAAYEYEQFMDWENWSFISLAGYGVSDSNITFYDESQYIVSVGLNYKF
Sequences:
>Translated_317_residues MKIKITLLALSIATSPAFAKLADEQGFSGEISINTGVTSSTSNFNTDADSTISSINQKASSESSFLIAPLGSIAYTFGEK LNHQVYTGTTRDDVATGTVVLELGYKYQLESGMTIDASLLPTVMSGETWADPYNTTSGRTKTDETGNAFRVKLSSIAGSA FSLDMAYATKDVEDDRVREELQRDANTFYLKGQYRQPINRTMMLVPSLIYQSRDADGNAESYEQFGGEVSLFSGIGRHQY ALTAGYNQRSYDASNPIYNKKRSDDNINLFAAYEYEQFMDWENWSFISLAGYGVSDSNITFYDESQYIVSVGLNYKF >Mature_317_residues MKIKITLLALSIATSPAFAKLADEQGFSGEISINTGVTSSTSNFNTDADSTISSINQKASSESSFLIAPLGSIAYTFGEK LNHQVYTGTTRDDVATGTVVLELGYKYQLESGMTIDASLLPTVMSGETWADPYNTTSGRTKTDETGNAFRVKLSSIAGSA FSLDMAYATKDVEDDRVREELQRDANTFYLKGQYRQPINRTMMLVPSLIYQSRDADGNAESYEQFGGEVSLFSGIGRHQY ALTAGYNQRSYDASNPIYNKKRSDDNINLFAAYEYEQFMDWENWSFISLAGYGVSDSNITFYDESQYIVSVGLNYKF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35073; Mature: 35073
Theoretical pI: Translated: 4.36; Mature: 4.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIKITLLALSIATSPAFAKLADEQGFSGEISINTGVTSSTSNFNTDADSTISSINQKAS CEEEEEEEEEEECCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCC SESSFLIAPLGSIAYTFGEKLNHQVYTGTTRDDVATGTVVLELGYKYQLESGMTIDASLL CCCCEEEEEHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEECCEEEECCCCEECHHHC PTVMSGETWADPYNTTSGRTKTDETGNAFRVKLSSIAGSAFSLDMAYATKDVEDDRVREE CHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHCCCEEEEEEEHHCCCCCHHHHHHH LQRDANTFYLKGQYRQPINRTMMLVPSLIYQSRDADGNAESYEQFGGEVSLFSGIGRHQY HHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEEECCCCCCEE ALTAGYNQRSYDASNPIYNKKRSDDNINLFAAYEYEQFMDWENWSFISLAGYGVSDSNIT EEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHHCCCCCCCEEEEEECCCCCCCEE FYDESQYIVSVGLNYKF EEECCEEEEEECCCCCC >Mature Secondary Structure MKIKITLLALSIATSPAFAKLADEQGFSGEISINTGVTSSTSNFNTDADSTISSINQKAS CEEEEEEEEEEECCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCC SESSFLIAPLGSIAYTFGEKLNHQVYTGTTRDDVATGTVVLELGYKYQLESGMTIDASLL CCCCEEEEEHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEECCEEEECCCCEECHHHC PTVMSGETWADPYNTTSGRTKTDETGNAFRVKLSSIAGSAFSLDMAYATKDVEDDRVREE CHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHCCCEEEEEEEHHCCCCCHHHHHHH LQRDANTFYLKGQYRQPINRTMMLVPSLIYQSRDADGNAESYEQFGGEVSLFSGIGRHQY HHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEEECCCCCCEE ALTAGYNQRSYDASNPIYNKKRSDDNINLFAAYEYEQFMDWENWSFISLAGYGVSDSNIT EEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHHCCCCCCCEEEEEECCCCCCCEE FYDESQYIVSVGLNYKF EEECCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA