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The map label for this gene is yqfA [H]

Identifier: 218711004

GI number: 218711004

Start: 3268342

End: 3268995

Strand: Reverse

Name: yqfA [H]

Synonym: VS_3133

Alternate gene names: 218711004

Gene position: 3268995-3268342 (Counterclockwise)

Preceding gene: 218711005

Following gene: 218710997

Centisome position: 99.08

GC content: 46.79

Gene sequence:

>654_bases
ATGTCTGCATCATCAGCCAGCGAATACAGTGACATCGAAGAACGCGCTAATGCAATAACCCATGGCTTGGGCGTTGTGCT
CGGCGTAGTTGGTCTGATCTTACTGCTTATTCGTGCGTTTGATTACCAAGCCGACATGCTAACTGTTGCTAGTATGGCGG
TGTATGGCAGCAGTATTATTCTGCTCTTTCTCGCCTCCACGTTGTACCACTCGATCACCACTGAGAAAACCAAGCGCTTA
CTCAAAACCCTTGACCACTGTGCGATTTATTTGTTGATTGCGGGCAGTTACACGCCGTTTCTCTTAGTGGGCTTAAGAAC
CCCATTAGCTATGGGTTTGATGGCTGTGATCTGGGGGATTGCGCTGGTGGGCATCATCATGAAGATAGCCTTCGTTTATC
GATTCAAGCGTTTATCGCTGTTCATTTACCTAGCGATGGGTTGGCTATCTTTGATAGTTGTTTATCAATTAGCGATGAAT
ATCGATATAGGTGGTTTGGTGTTACTGGCAGTTGGCGGAGTGATTTACTCGCTGGGTGTGATTTTCTATGTGGCTAAACG
CATCCCTTATAACCATGCCATCTGGCACTTGTTTGTATTGGCGGGCTGCGCTTGCCATTTCTTCGCTATCTATCTGTTTG
TGACACCGGTTTAG

Upstream 100 bases:

>100_bases
TTATTAATGTCATAAAAGATGTCATAAAAATTTAAGCTTACACGTGTAAGCTTAATGTGCAATACTGGGTCAATCGAACA
TTTACTCTAGTAGGATATTC

Downstream 100 bases:

>100_bases
TTTTGATTGAACCGGTATGCCCCTAACGGGTAGAAACGTCAGTGATCTCCACGTCTATTTTATATTCAGGATACTTATCA
ACATCGATCGCTAAGTATTT

Product: hemolysin III

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MSASSASEYSDIEERANAITHGLGVVLGVVGLILLLIRAFDYQADMLTVASMAVYGSSIILLFLASTLYHSITTEKTKRL
LKTLDHCAIYLLIAGSYTPFLLVGLRTPLAMGLMAVIWGIALVGIIMKIAFVYRFKRLSLFIYLAMGWLSLIVVYQLAMN
IDIGGLVLLAVGGVIYSLGVIFYVAKRIPYNHAIWHLFVLAGCACHFFAIYLFVTPV

Sequences:

>Translated_217_residues
MSASSASEYSDIEERANAITHGLGVVLGVVGLILLLIRAFDYQADMLTVASMAVYGSSIILLFLASTLYHSITTEKTKRL
LKTLDHCAIYLLIAGSYTPFLLVGLRTPLAMGLMAVIWGIALVGIIMKIAFVYRFKRLSLFIYLAMGWLSLIVVYQLAMN
IDIGGLVLLAVGGVIYSLGVIFYVAKRIPYNHAIWHLFVLAGCACHFFAIYLFVTPV
>Mature_216_residues
SASSASEYSDIEERANAITHGLGVVLGVVGLILLLIRAFDYQADMLTVASMAVYGSSIILLFLASTLYHSITTEKTKRLL
KTLDHCAIYLLIAGSYTPFLLVGLRTPLAMGLMAVIWGIALVGIIMKIAFVYRFKRLSLFIYLAMGWLSLIVVYQLAMNI
DIGGLVLLAVGGVIYSLGVIFYVAKRIPYNHAIWHLFVLAGCACHFFAIYLFVTPV

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI52630445, Length=215, Percent_Identity=37.6744186046512, Blast_Score=114, Evalue=7e-26,
Organism=Homo sapiens, GI154759275, Length=221, Percent_Identity=31.6742081447964, Blast_Score=109, Evalue=1e-24,
Organism=Homo sapiens, GI154759277, Length=246, Percent_Identity=28.4552845528455, Blast_Score=97, Evalue=1e-20,
Organism=Escherichia coli, GI1789266, Length=206, Percent_Identity=63.1067961165049, Blast_Score=267, Evalue=3e-73,
Organism=Caenorhabditis elegans, GI71996356, Length=221, Percent_Identity=33.9366515837104, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24640324, Length=236, Percent_Identity=33.8983050847458, Blast_Score=100, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 23821; Mature: 23690

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASSASEYSDIEERANAITHGLGVVLGVVGLILLLIRAFDYQADMLTVASMAVYGSSII
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LLFLASTLYHSITTEKTKRLLKTLDHCAIYLLIAGSYTPFLLVGLRTPLAMGLMAVIWGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ALVGIIMKIAFVYRFKRLSLFIYLAMGWLSLIVVYQLAMNIDIGGLVLLAVGGVIYSLGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
IFYVAKRIPYNHAIWHLFVLAGCACHFFAIYLFVTPV
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SASSASEYSDIEERANAITHGLGVVLGVVGLILLLIRAFDYQADMLTVASMAVYGSSII
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LLFLASTLYHSITTEKTKRLLKTLDHCAIYLLIAGSYTPFLLVGLRTPLAMGLMAVIWGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ALVGIIMKIAFVYRFKRLSLFIYLAMGWLSLIVVYQLAMNIDIGGLVLLAVGGVIYSLGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
IFYVAKRIPYNHAIWHLFVLAGCACHFFAIYLFVTPV
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]