| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218710956
Identifier: 218710956
GI number: 218710956
Start: 3213572
End: 3214603
Strand: Reverse
Name: 218710956
Synonym: VS_3070
Alternate gene names: NA
Gene position: 3214603-3213572 (Counterclockwise)
Preceding gene: 218710957
Following gene: 218710955
Centisome position: 97.43
GC content: 46.03
Gene sequence:
>1032_bases TTGCAGAATGGGCAAAAGTGTTACGAGGAAGTTAAAATGCAACATGGACTGTTGTCATCATTACTCCTGTCTACTTCACT GTTACTTTCACCGGTTGGCATGAGTTATGCCACCGAGATGTCTCCACTTACAGTAGAGTCTTGGCTTGAGAATGATCAAG TAAAACTGAAAACTGCTGAATTACTCGAGCTTGTCGTGCGTGACGAAGTCAATTCGCTACGCTTTTCGCTTGAGCGTCTG ACATTTCCCCAGCAAGAGGTGGCTCGTTACCGGCTCTTGAAGAAGATCGAACAGCAAGAGATCGTTCTCACCCCTAAGAT GTCTATTTTCATAGAACAGCAACTCGCTATCACGCCGACCTACCAAGTATTAGAGCGTGGGGATGGCTACGAGTTTACGG TACCTGCTTTTAATTACCCTTCGATTGCTAATCGACTGATCAAGCAATGGCATCAAGACCAGAAGACACTGGTGTTTGTA CTGGATGCAGAAAAGCGGAAACTTAACCTTAATGAGTGGTTGTCAGGGCCTGAGCATCAAGTTCAAACGCGAGAAGCACT ATTAATTCGAGAGCTAGACAGTTTGTCTCCTGAAGCGGTTGACTATCTGACTAAGCAACTCACCGCATCTTCTATTGTTA GCTGGTTACCTTCTACCGAGGTGGTAGTTCGATTAGCGCAAGTGAGCGAAGACCCTGAGGTCTATAAGATTCTATGGCGA ATGAAGGCCGATTATCATAGCCAAGCAGAGTTAGAGCGACTTGCTAAAACTAAACAAACGTTCGCGTTGGAACAGGTAAT GGCAGCGACTAAGAATCCTCGTTTGAAAGATGAAGCGATTACTTTGCTTACCAAGGTGAACCCGCTATCAGAAGAGGTGA AGCAGTTCCTTGTCTCTAGGATGGCGATTGCCGATGAAGCGCCATTAGTCGCCCGTGAATTAGCCAAACAAGGTCACACG CGCTGGTTGCAAGATCTTGTGAATGATAACCCTCAGGTGAAGAGCTCTTTGATCGAGCAAGCATTACCGTAA
Upstream 100 bases:
>100_bases TCTTTGACGCAATGCGTCGTCAGTAGTATTGATTAGCTTATAGTTATTAAAAAGCGCTGCCTTCGGGTGGCGCTTTTTAT TTGCATTTTGTAGCGACAGC
Downstream 100 bases:
>100_bases AGTGGATTTTTCCTCTCAATAACCACACTAAAAAGGGGGATCTCAGCGTCACCCTTTTTGATATACTGAGCGCAGAATAA TCAGCATGTAGAAGCCCTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 343; Mature: 343
Protein sequence:
>343_residues MQNGQKCYEEVKMQHGLLSSLLLSTSLLLSPVGMSYATEMSPLTVESWLENDQVKLKTAELLELVVRDEVNSLRFSLERL TFPQQEVARYRLLKKIEQQEIVLTPKMSIFIEQQLAITPTYQVLERGDGYEFTVPAFNYPSIANRLIKQWHQDQKTLVFV LDAEKRKLNLNEWLSGPEHQVQTREALLIRELDSLSPEAVDYLTKQLTASSIVSWLPSTEVVVRLAQVSEDPEVYKILWR MKADYHSQAELERLAKTKQTFALEQVMAATKNPRLKDEAITLLTKVNPLSEEVKQFLVSRMAIADEAPLVARELAKQGHT RWLQDLVNDNPQVKSSLIEQALP
Sequences:
>Translated_343_residues MQNGQKCYEEVKMQHGLLSSLLLSTSLLLSPVGMSYATEMSPLTVESWLENDQVKLKTAELLELVVRDEVNSLRFSLERL TFPQQEVARYRLLKKIEQQEIVLTPKMSIFIEQQLAITPTYQVLERGDGYEFTVPAFNYPSIANRLIKQWHQDQKTLVFV LDAEKRKLNLNEWLSGPEHQVQTREALLIRELDSLSPEAVDYLTKQLTASSIVSWLPSTEVVVRLAQVSEDPEVYKILWR MKADYHSQAELERLAKTKQTFALEQVMAATKNPRLKDEAITLLTKVNPLSEEVKQFLVSRMAIADEAPLVARELAKQGHT RWLQDLVNDNPQVKSSLIEQALP >Mature_343_residues MQNGQKCYEEVKMQHGLLSSLLLSTSLLLSPVGMSYATEMSPLTVESWLENDQVKLKTAELLELVVRDEVNSLRFSLERL TFPQQEVARYRLLKKIEQQEIVLTPKMSIFIEQQLAITPTYQVLERGDGYEFTVPAFNYPSIANRLIKQWHQDQKTLVFV LDAEKRKLNLNEWLSGPEHQVQTREALLIRELDSLSPEAVDYLTKQLTASSIVSWLPSTEVVVRLAQVSEDPEVYKILWR MKADYHSQAELERLAKTKQTFALEQVMAATKNPRLKDEAITLLTKVNPLSEEVKQFLVSRMAIADEAPLVARELAKQGHT RWLQDLVNDNPQVKSSLIEQALP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39315; Mature: 39315
Theoretical pI: Translated: 5.33; Mature: 5.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQNGQKCYEEVKMQHGLLSSLLLSTSLLLSPVGMSYATEMSPLTVESWLENDQVKLKTAE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHCCCCEEEHHHH LLELVVRDEVNSLRFSLERLTFPQQEVARYRLLKKIEQQEIVLTPKMSIFIEQQLAITPT HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHCCCHH YQVLERGDGYEFTVPAFNYPSIANRLIKQWHQDQKTLVFVLDAEKRKLNLNEWLSGPEHQ HHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHCCCCHHH VQTREALLIRELDSLSPEAVDYLTKQLTASSIVSWLPSTEVVVRLAQVSEDPEVYKILWR HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHH MKADYHSQAELERLAKTKQTFALEQVMAATKNPRLKDEAITLLTKVNPLSEEVKQFLVSR HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH MAIADEAPLVARELAKQGHTRWLQDLVNDNPQVKSSLIEQALP HHHCCCCCHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCC >Mature Secondary Structure MQNGQKCYEEVKMQHGLLSSLLLSTSLLLSPVGMSYATEMSPLTVESWLENDQVKLKTAE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHCCCCEEEHHHH LLELVVRDEVNSLRFSLERLTFPQQEVARYRLLKKIEQQEIVLTPKMSIFIEQQLAITPT HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHCCCHH YQVLERGDGYEFTVPAFNYPSIANRLIKQWHQDQKTLVFVLDAEKRKLNLNEWLSGPEHQ HHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHCCCCHHH VQTREALLIRELDSLSPEAVDYLTKQLTASSIVSWLPSTEVVVRLAQVSEDPEVYKILWR HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHH MKADYHSQAELERLAKTKQTFALEQVMAATKNPRLKDEAITLLTKVNPLSEEVKQFLVSR HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH MAIADEAPLVARELAKQGHTRWLQDLVNDNPQVKSSLIEQALP HHHCCCCCHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA