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The map label for this gene is ubiD [H]

Identifier: 218710955

GI number: 218710955

Start: 3211632

End: 3213473

Strand: Reverse

Name: ubiD [H]

Synonym: VS_3069

Alternate gene names: 218710955

Gene position: 3213473-3211632 (Counterclockwise)

Preceding gene: 218710956

Following gene: 218710954

Centisome position: 97.4

GC content: 45.06

Gene sequence:

>1842_bases
ATGAGTTTTAAAGATTTACGTGATTTTGTCGACCATCTTGAAAGCATTGGTCAGTTGAAACGCATTTCTCACCCTGTCGA
CCCAGACTATGAAATGACCGAGATTAGCGACCGTACTCTACGTGCTGGTGGCCCGGCTCTTTTATTTGAAAATCCCGTAG
GCTATGACATGCCTGTTTTGACCAATCTATTCGGTACACCTGATCGGGTAGCCATTGGTATGGGGCGTCAAGAGGTCAAA
GAGTTACGCGAAGTAGGTAAGTTGCTTGCTTACTTAAAAGAACCTGAGCCACCAAAAGGTTTTAAAGATGCTATCGATAA
GCTGCCTGTGTTTAAGCAAGTCTTAAATATGCCAGCTAAGCGTCTTCGTAAGGCTACCTGTCAACAAATCGTATGGCAGG
GTGATGACGTCGACCTAGATAAAATTCCGGTGATGAGCTGTTGGGCAGACGATGTTGCGCCATTGCTAACATGGGGCTTA
ACGGTTACTCGTGGTCCGAACAAGAAACGCCAAAACTTAGGCATCTATCGTCAACAGAAGATCGGTAAGAATAAAATCAT
CATGCGTTGGTTAGCCCACCGCGGTGGAGCGCTTGATCTACGTGATTGGATGGAAACCAACCCAGGCAAGCCATTCCCTG
TATCGGTAGCGTTTGGTGCCGATCCTGCCACGATTCTTGGTGCCGTTACGCCAGTTCCTGATACCTTATCGGAATACGCG
TTTGCTGGCTTATTACGTGGCAGTAAAACTGAGGTCGTTAAATCAATTAGTAATGACCTAGAAGTGCCAGCGAGTGCTGA
AATCGTAATGGAAGGTTACATCGACCCGAATGAGTTCGCAGACGAAGGGCCGTACGGAGACCATACTGGTTACTACAACG
AGAAAGAAAAGCATCATGTGTTTACTATTACTCATGTAACCATGCGCGAGAATCCGATCTATCACAGTACCTATACTGGC
CGTCCACCTGATGAGCCCGCAGTATTAGGTGTTGCGTTAAATGAAGTGTTTGTTCCTATTCTTCAAAAGCAATTCCCAGA
GATAGAAGACTTCTACTTGCCACCTGAAGGTTGTTCATACCGAATGGCGGTAGTGACCATGAAGAAGCAATACCCAGGTC
ACGCTAAGCGCGTGATGATGGGTGTATGGTCTTTCCTACGCCAATTCATGTACACCAAATTTGTTTTGGTATGCGATGAG
GATGTTAACGCACGTGATTGGTCTCAAGTGACCGCTGCTATGTGTGAACATATGGATCCGTCTCGTGATAGCCTGATGAT
AGAGAACACACCTATCGATTCACTAGACTTTGCATCGCCAGTGGTAGGTTTAGGTTCAAAAATGGGTTTAGACATTACTA
AGAAGTGGGATGCGGAACTGGCACTATCACCTAATGCTCAATCTTTACCTATAGATAGTCAGCATGTTGAAGGTTGCTTA
GCTGAGCTAACCGAAACCTTCCCTGAAATTATTGATATTCACTTACAGAATGACAATGCGTGTATGGTCGTTGTGTCTAT
CGATAAGCAAGTTGCAGGTAATGGTAAGAAAATCATTGAAGCGGTTTGGTCTCAGTTCGGTGAGAACAAGTTTGTCATCG
TATGTGATAGTGACGTTAACGTCAGTGACTGGAATGACATTATCTGGGCGGTGACTACAAGAATGGATCCGGCAAGAGAT
ACGTTCTTCCTGAAAAACCAAACTGGACACTCAAAAATGGGTCTAGATGCGACGAACAAGTTTGAAGGTGAATGCCTACG
AGAGTGGGGTGTTCCAATCACCAAGGATCCAGATGTCGTTAAAAAGATTGATAGCATTTGGGAACAACTAGGAATCTCAT
GA

Upstream 100 bases:

>100_bases
AAAGTGGATTTTTCCTCTCAATAACCACACTAAAAAGGGGGATCTCAGCGTCACCCTTTTTGATATACTGAGCGCAGAAT
AATCAGCATGTAGAAGCCCT

Downstream 100 bases:

>100_bases
GCTTCCAAGTAATCTTATACCCAGAAATTATCAGTTTTACCGTAGAAAAAGGGCAAACGGTTTTGGATGCTGCGCTCAAC
AGCAATATCAATTTTCCAAA

Product: putative 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

Products: 2-octaprenylphenol; CO2 [C]

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase [H]

Number of amino acids: Translated: 613; Mature: 612

Protein sequence:

>613_residues
MSFKDLRDFVDHLESIGQLKRISHPVDPDYEMTEISDRTLRAGGPALLFENPVGYDMPVLTNLFGTPDRVAIGMGRQEVK
ELREVGKLLAYLKEPEPPKGFKDAIDKLPVFKQVLNMPAKRLRKATCQQIVWQGDDVDLDKIPVMSCWADDVAPLLTWGL
TVTRGPNKKRQNLGIYRQQKIGKNKIIMRWLAHRGGALDLRDWMETNPGKPFPVSVAFGADPATILGAVTPVPDTLSEYA
FAGLLRGSKTEVVKSISNDLEVPASAEIVMEGYIDPNEFADEGPYGDHTGYYNEKEKHHVFTITHVTMRENPIYHSTYTG
RPPDEPAVLGVALNEVFVPILQKQFPEIEDFYLPPEGCSYRMAVVTMKKQYPGHAKRVMMGVWSFLRQFMYTKFVLVCDE
DVNARDWSQVTAAMCEHMDPSRDSLMIENTPIDSLDFASPVVGLGSKMGLDITKKWDAELALSPNAQSLPIDSQHVEGCL
AELTETFPEIIDIHLQNDNACMVVVSIDKQVAGNGKKIIEAVWSQFGENKFVIVCDSDVNVSDWNDIIWAVTTRMDPARD
TFFLKNQTGHSKMGLDATNKFEGECLREWGVPITKDPDVVKKIDSIWEQLGIS

Sequences:

>Translated_613_residues
MSFKDLRDFVDHLESIGQLKRISHPVDPDYEMTEISDRTLRAGGPALLFENPVGYDMPVLTNLFGTPDRVAIGMGRQEVK
ELREVGKLLAYLKEPEPPKGFKDAIDKLPVFKQVLNMPAKRLRKATCQQIVWQGDDVDLDKIPVMSCWADDVAPLLTWGL
TVTRGPNKKRQNLGIYRQQKIGKNKIIMRWLAHRGGALDLRDWMETNPGKPFPVSVAFGADPATILGAVTPVPDTLSEYA
FAGLLRGSKTEVVKSISNDLEVPASAEIVMEGYIDPNEFADEGPYGDHTGYYNEKEKHHVFTITHVTMRENPIYHSTYTG
RPPDEPAVLGVALNEVFVPILQKQFPEIEDFYLPPEGCSYRMAVVTMKKQYPGHAKRVMMGVWSFLRQFMYTKFVLVCDE
DVNARDWSQVTAAMCEHMDPSRDSLMIENTPIDSLDFASPVVGLGSKMGLDITKKWDAELALSPNAQSLPIDSQHVEGCL
AELTETFPEIIDIHLQNDNACMVVVSIDKQVAGNGKKIIEAVWSQFGENKFVIVCDSDVNVSDWNDIIWAVTTRMDPARD
TFFLKNQTGHSKMGLDATNKFEGECLREWGVPITKDPDVVKKIDSIWEQLGIS
>Mature_612_residues
SFKDLRDFVDHLESIGQLKRISHPVDPDYEMTEISDRTLRAGGPALLFENPVGYDMPVLTNLFGTPDRVAIGMGRQEVKE
LREVGKLLAYLKEPEPPKGFKDAIDKLPVFKQVLNMPAKRLRKATCQQIVWQGDDVDLDKIPVMSCWADDVAPLLTWGLT
VTRGPNKKRQNLGIYRQQKIGKNKIIMRWLAHRGGALDLRDWMETNPGKPFPVSVAFGADPATILGAVTPVPDTLSEYAF
AGLLRGSKTEVVKSISNDLEVPASAEIVMEGYIDPNEFADEGPYGDHTGYYNEKEKHHVFTITHVTMRENPIYHSTYTGR
PPDEPAVLGVALNEVFVPILQKQFPEIEDFYLPPEGCSYRMAVVTMKKQYPGHAKRVMMGVWSFLRQFMYTKFVLVCDED
VNARDWSQVTAAMCEHMDPSRDSLMIENTPIDSLDFASPVVGLGSKMGLDITKKWDAELALSPNAQSLPIDSQHVEGCLA
ELTETFPEIIDIHLQNDNACMVVVSIDKQVAGNGKKIIEAVWSQFGENKFVIVCDSDVNVSDWNDIIWAVTTRMDPARDT
FFLKNQTGHSKMGLDATNKFEGECLREWGVPITKDPDVVKKIDSIWEQLGIS

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=459, Percent_Identity=77.5599128540305, Blast_Score=751, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=330, Percent_Identity=26.3636363636364, Blast_Score=107, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: NA

Molecular weight: Translated: 68781; Mature: 68650

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFKDLRDFVDHLESIGQLKRISHPVDPDYEMTEISDRTLRAGGPALLFENPVGYDMPVL
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHH
TNLFGTPDRVAIGMGRQEVKELREVGKLLAYLKEPEPPKGFKDAIDKLPVFKQVLNMPAK
HHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCHHHHHHHHCHHH
RLRKATCQQIVWQGDDVDLDKIPVMSCWADDVAPLLTWGLTVTRGPNKKRQNLGIYRQQK
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEECCCCCHHHHCCCHHHHH
IGKNKIIMRWLAHRGGALDLRDWMETNPGKPFPVSVAFGADPATILGAVTPVPDTLSEYA
CCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEEECCCHHHHHHCCCCCCHHHHHHH
FAGLLRGSKTEVVKSISNDLEVPASAEIVMEGYIDPNEFADEGPYGDHTGYYNEKEKHHV
HHHHHCCCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCCEE
FTITHVTMRENPIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIEDFYLPPEGCSY
EEEEEEEEECCCCEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCE
RMAVVTMKKQYPGHAKRVMMGVWSFLRQFMYTKFVLVCDEDVNARDWSQVTAAMCEHMDP
EEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHCCCC
SRDSLMIENTPIDSLDFASPVVGLGSKMGLDITKKWDAELALSPNAQSLPIDSQHVEGCL
CCCCEEEECCCCCCHHHCCHHHHCCCCCCCCEEECCCCEEEECCCCCCCCCCHHHHHHHH
AELTETFPEIIDIHLQNDNACMVVVSIDKQVAGNGKKIIEAVWSQFGENKFVIVCDSDVN
HHHHHHHHHHEEEEEECCCEEEEEEEECCHHCCCHHHHHHHHHHHHCCCCEEEEECCCCC
VSDWNDIIWAVTTRMDPARDTFFLKNQTGHSKMGLDATNKFEGECLREWGVPITKDPDVV
CCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHH
KKIDSIWEQLGIS
HHHHHHHHHHCCC
>Mature Secondary Structure 
SFKDLRDFVDHLESIGQLKRISHPVDPDYEMTEISDRTLRAGGPALLFENPVGYDMPVL
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHHHH
TNLFGTPDRVAIGMGRQEVKELREVGKLLAYLKEPEPPKGFKDAIDKLPVFKQVLNMPAK
HHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCHHHHHHHHCHHH
RLRKATCQQIVWQGDDVDLDKIPVMSCWADDVAPLLTWGLTVTRGPNKKRQNLGIYRQQK
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEECCCCCHHHHCCCHHHHH
IGKNKIIMRWLAHRGGALDLRDWMETNPGKPFPVSVAFGADPATILGAVTPVPDTLSEYA
CCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEEECCCHHHHHHCCCCCCHHHHHHH
FAGLLRGSKTEVVKSISNDLEVPASAEIVMEGYIDPNEFADEGPYGDHTGYYNEKEKHHV
HHHHHCCCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCCEE
FTITHVTMRENPIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIEDFYLPPEGCSY
EEEEEEEEECCCCEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCE
RMAVVTMKKQYPGHAKRVMMGVWSFLRQFMYTKFVLVCDEDVNARDWSQVTAAMCEHMDP
EEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHCCCC
SRDSLMIENTPIDSLDFASPVVGLGSKMGLDITKKWDAELALSPNAQSLPIDSQHVEGCL
CCCCEEEECCCCCCHHHCCHHHHCCCCCCCCEEECCCCEEEECCCCCCCCCCHHHHHHHH
AELTETFPEIIDIHLQNDNACMVVVSIDKQVAGNGKKIIEAVWSQFGENKFVIVCDSDVN
HHHHHHHHHHEEEEEECCCEEEEEEEECCHHCCCHHHHHHHHHHHHCCCCEEEEECCCCC
VSDWNDIIWAVTTRMDPARDTFFLKNQTGHSKMGLDATNKFEGECLREWGVPITKDPDVV
CCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHH
KKIDSIWEQLGIS
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 3-octaprenyl-4-hydroxybenzoate [C]

Specific reaction: 3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA