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The map label for this gene is yuxH [H]

Identifier: 218710932

GI number: 218710932

Start: 3179738

End: 3180958

Strand: Reverse

Name: yuxH [H]

Synonym: VS_3035

Alternate gene names: 218710932

Gene position: 3180958-3179738 (Counterclockwise)

Preceding gene: 218710933

Following gene: 218710931

Centisome position: 96.41

GC content: 44.47

Gene sequence:

>1221_bases
ATGACCGCTACGTACGTTGCTCGACAACCTATCTTAAACCGTAACAAGAACACGCTTGGTTATGAGCTGCTGTTTCGTGA
CGGTGATAGGAATGCCTACCCCGCGCATATTGAATCTAATCGAGCAACGTATCGCCTGATCGTTGAAAACTTCTTGTCCG
TTGGGCTTAACCCTTCGATCCCATCTTCACGCTGCTTTATTAATTTTCCGTATCAGAGCTTGATTCGCCGTCTTCCAATG
AGCTTACCGAAAGATAAGGTCGTAGTTGAGATTCTTGAAACCTGCCAACCGACCGATGAGCTATTAGAGGTAATCAAAGA
GCTTTATCAAGCAGGGTATATGATTGCCCTAGATGACTTTACTTCGACACCTGAGTGGGAACGTTTCCTTCAATATACGC
ATATTGTTAAGCTTGATATCATGCAGATGGGGTTGGATGCGGCGTGTGAGTTAGTCAAAAAGCACGAAGGGAAGAAGTAT
AGTTTTCTTGCTGAGCGGGTTGAAACGGAACAAGAGTTCCAACAAGCGAAAGAAGCAGGGTTTAAGTTTTTCCAAGGCTA
TTTCTTTAGTAAGCCAGAAATCATAAAGACTAAGTATATTAGCCCAGAGCAAGTGATAGCGATGGAGCTATTCCAAGAGG
TCTGTAAGCCGGATGTCGACTTCCAACGTGTTGAAAGCATCGTCGCGAAAGATATTGCCTTATCCTATAAGCTTCTGCGC
TTTGTGAATACTATGTCACCCCGCCTTGAGGTCACCATCTCTTCATTTCGTCAGGCCTTGGTTTATTTAGGGCAAGAGAA
ATTGAAAATGTTTGTCTCGCTAGCAGTAGCGTCTTATGTCTCTGATAAAAAGCCCAAAGAACTGTATGGACTGTCTTTGC
AGCGTGCGCAGTTTTGCCAACGGATGTCTCGTTACCAAGTATTTAAAGGGCATACTGAACAAGCCTTTATGATTGGCTTG
TTCTCATTACTTGATGCATTGCTCGATCTGTCGTTAGAGAATTTAGTTGAGCAACTGCCTTTGTGTAAAAGTATCAAGGT
GGCTCTGCTTCGTAGAGAAGGGCCATATGGTACTTTGCTCGCACTTGAAGAGAGCTTTGAACATGCCGATTGGCAACAGA
TTGATGAGCACTGCGCTGATTTAGGATTAAGCGTGGATCAGGTCAAAACGGAGCTTACTGAAGCTCGCCGTTGGAGCCAT
ACCGTGACTAACAAGCTCTGA

Upstream 100 bases:

>100_bases
ATTTGGTGGTATGTTCATGGGTTGCGGCGCTTTGCTGGCTGCTGCCAAAGCTTAATGAAAGTAATAGAGTTATAGTTAAA
TCAATTAGAGTTATCAATAA

Downstream 100 bases:

>100_bases
TATTTCTTCGTTAAACTTTTATGACAATTGAAACGCACGCCTTGACGTGCGTTTTTTTATAACTAATATATACGCATATC
CATATATGAGTATGTAGTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MTATYVARQPILNRNKNTLGYELLFRDGDRNAYPAHIESNRATYRLIVENFLSVGLNPSIPSSRCFINFPYQSLIRRLPM
SLPKDKVVVEILETCQPTDELLEVIKELYQAGYMIALDDFTSTPEWERFLQYTHIVKLDIMQMGLDAACELVKKHEGKKY
SFLAERVETEQEFQQAKEAGFKFFQGYFFSKPEIIKTKYISPEQVIAMELFQEVCKPDVDFQRVESIVAKDIALSYKLLR
FVNTMSPRLEVTISSFRQALVYLGQEKLKMFVSLAVASYVSDKKPKELYGLSLQRAQFCQRMSRYQVFKGHTEQAFMIGL
FSLLDALLDLSLENLVEQLPLCKSIKVALLRREGPYGTLLALEESFEHADWQQIDEHCADLGLSVDQVKTELTEARRWSH
TVTNKL

Sequences:

>Translated_406_residues
MTATYVARQPILNRNKNTLGYELLFRDGDRNAYPAHIESNRATYRLIVENFLSVGLNPSIPSSRCFINFPYQSLIRRLPM
SLPKDKVVVEILETCQPTDELLEVIKELYQAGYMIALDDFTSTPEWERFLQYTHIVKLDIMQMGLDAACELVKKHEGKKY
SFLAERVETEQEFQQAKEAGFKFFQGYFFSKPEIIKTKYISPEQVIAMELFQEVCKPDVDFQRVESIVAKDIALSYKLLR
FVNTMSPRLEVTISSFRQALVYLGQEKLKMFVSLAVASYVSDKKPKELYGLSLQRAQFCQRMSRYQVFKGHTEQAFMIGL
FSLLDALLDLSLENLVEQLPLCKSIKVALLRREGPYGTLLALEESFEHADWQQIDEHCADLGLSVDQVKTELTEARRWSH
TVTNKL
>Mature_405_residues
TATYVARQPILNRNKNTLGYELLFRDGDRNAYPAHIESNRATYRLIVENFLSVGLNPSIPSSRCFINFPYQSLIRRLPMS
LPKDKVVVEILETCQPTDELLEVIKELYQAGYMIALDDFTSTPEWERFLQYTHIVKLDIMQMGLDAACELVKKHEGKKYS
FLAERVETEQEFQQAKEAGFKFFQGYFFSKPEIIKTKYISPEQVIAMELFQEVCKPDVDFQRVESIVAKDIALSYKLLRF
VNTMSPRLEVTISSFRQALVYLGQEKLKMFVSLAVASYVSDKKPKELYGLSLQRAQFCQRMSRYQVFKGHTEQAFMIGLF
SLLDALLDLSLENLVEQLPLCKSIKVALLRREGPYGTLLALEESFEHADWQQIDEHCADLGLSVDQVKTELTEARRWSHT
VTNKL

Specific function: Unknown

COG id: COG3434

COG function: function code T; Predicted signal transduction protein containing EAL and modified HD-GYP domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014408
- InterPro:   IPR001633
- InterPro:   IPR013976 [H]

Pfam domain/function: PF00563 EAL; PF08668 HDOD [H]

EC number: NA

Molecular weight: Translated: 46902; Mature: 46771

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATYVARQPILNRNKNTLGYELLFRDGDRNAYPAHIESNRATYRLIVENFLSVGLNPSI
CCCCHHHHCCHHCCCCCCCEEEEEEECCCCCCCCCEECCCCHHHHHHHHHHHHCCCCCCC
PSSRCFINFPYQSLIRRLPMSLPKDKVVVEILETCQPTDELLEVIKELYQAGYMIALDDF
CCCCEEEECCHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
TSTPEWERFLQYTHIVKLDIMQMGLDAACELVKKHEGKKYSFLAERVETEQEFQQAKEAG
CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
FKFFQGYFFSKPEIIKTKYISPEQVIAMELFQEVCKPDVDFQRVESIVAKDIALSYKLLR
HHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
FVNTMSPRLEVTISSFRQALVYLGQEKLKMFVSLAVASYVSDKKPKELYGLSLQRAQFCQ
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHH
RMSRYQVFKGHTEQAFMIGLFSLLDALLDLSLENLVEQLPLCKSIKVALLRREGPYGTLL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEE
ALEESFEHADWQQIDEHCADLGLSVDQVKTELTEARRWSHTVTNKL
HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TATYVARQPILNRNKNTLGYELLFRDGDRNAYPAHIESNRATYRLIVENFLSVGLNPSI
CCCHHHHCCHHCCCCCCCEEEEEEECCCCCCCCCEECCCCHHHHHHHHHHHHCCCCCCC
PSSRCFINFPYQSLIRRLPMSLPKDKVVVEILETCQPTDELLEVIKELYQAGYMIALDDF
CCCCEEEECCHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
TSTPEWERFLQYTHIVKLDIMQMGLDAACELVKKHEGKKYSFLAERVETEQEFQQAKEAG
CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
FKFFQGYFFSKPEIIKTKYISPEQVIAMELFQEVCKPDVDFQRVESIVAKDIALSYKLLR
HHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
FVNTMSPRLEVTISSFRQALVYLGQEKLKMFVSLAVASYVSDKKPKELYGLSLQRAQFCQ
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHH
RMSRYQVFKGHTEQAFMIGLFSLLDALLDLSLENLVEQLPLCKSIKVALLRREGPYGTLL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEE
ALEESFEHADWQQIDEHCADLGLSVDQVKTELTEARRWSHTVTNKL
HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2507523; 9274030; 9384377; 1943994 [H]