Click here to switch to the map view.

The map label for this gene is rbpD [H]

Identifier: 218710894

GI number: 218710894

Start: 3146587

End: 3147039

Strand: Direct

Name: rbpD [H]

Synonym: VS_2995

Alternate gene names: 218710894

Gene position: 3146587-3147039 (Clockwise)

Preceding gene: 218710893

Following gene: 218710898

Centisome position: 95.37

GC content: 37.97

Gene sequence:

>453_bases
ATGAACTCAAAAAAATCGATGTTGTTAATTGTCGCGCTAGCTGTATTGGGCGGCATTGTTTTCTCTCAGGTAGATATATC
GCCTGCAATTACCTTTATCCTTGGTGTCTTGGCTTCCGCTTTTGTTGTTAATTTTTCAAGCACCAACTCAAAATCAGAGT
CAGAACCTAAGGCTTCAACAAAAACACTTTATGTGGGTAACCTTCCATACAAAGCGAATGAATCACATGTACGTGAATTG
TTCTCTGAATATGGTGAAGTATTTGCTGTACGTTTAATGAAAGACAAACGTACTGGTAAAAGAAGAGGTTTTGGATTTGT
TGTTATGGCAAGTAATGATGTGAATCATGCTATTTCAGAACTTAACGATAAAGATTACATGCAACGTACTTTAAAAGTAC
GCGTTGCAAACGATCCTAAACATCCAGAAACGGACGAAGCTGAGCTGAGCTAA

Upstream 100 bases:

>100_bases
AATACATTGGCAAAATGGAAGCCATGAACGTAAGATTCATGTGTCTATTTTGTTAATGGTAGATGCGTATATTTCGTTTA
TTAATATGTAGTATTCCGAT

Downstream 100 bases:

>100_bases
ACCCTAACTGCTTCAGCATACTATTTAGTGCACTTTCTTTTTTAGGAAGTGCACTACAAAAAGCCTCACGCACTCCCCCT
TCTTCAGTGCTGCTCTCTAA

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MNSKKSMLLIVALAVLGGIVFSQVDISPAITFILGVLASAFVVNFSSTNSKSESEPKASTKTLYVGNLPYKANESHVREL
FSEYGEVFAVRLMKDKRTGKRRGFGFVVMASNDVNHAISELNDKDYMQRTLKVRVANDPKHPETDEAELS

Sequences:

>Translated_150_residues
MNSKKSMLLIVALAVLGGIVFSQVDISPAITFILGVLASAFVVNFSSTNSKSESEPKASTKTLYVGNLPYKANESHVREL
FSEYGEVFAVRLMKDKRTGKRRGFGFVVMASNDVNHAISELNDKDYMQRTLKVRVANDPKHPETDEAELS
>Mature_150_residues
MNSKKSMLLIVALAVLGGIVFSQVDISPAITFILGVLASAFVVNFSSTNSKSESEPKASTKTLYVGNLPYKANESHVREL
FSEYGEVFAVRLMKDKRTGKRRGFGFVVMASNDVNHAISELNDKDYMQRTLKVRVANDPKHPETDEAELS

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI238859597, Length=73, Percent_Identity=41.0958904109589, Blast_Score=66, Evalue=9e-12,
Organism=Homo sapiens, GI14149675, Length=86, Percent_Identity=36.046511627907, Blast_Score=66, Evalue=9e-12,
Organism=Homo sapiens, GI4557493, Length=86, Percent_Identity=36.046511627907, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 16559; Mature: 16559

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSKKSMLLIVALAVLGGIVFSQVDISPAITFILGVLASAFVVNFSSTNSKSESEPKAST
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCC
KTLYVGNLPYKANESHVRELFSEYGEVFAVRLMKDKRTGKRRGFGFVVMASNDVNHAISE
CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHH
LNDKDYMQRTLKVRVANDPKHPETDEAELS
CCCHHHHHHHHHEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MNSKKSMLLIVALAVLGGIVFSQVDISPAITFILGVLASAFVVNFSSTNSKSESEPKAST
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCC
KTLYVGNLPYKANESHVRELFSEYGEVFAVRLMKDKRTGKRRGFGFVVMASNDVNHAISE
CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHH
LNDKDYMQRTLKVRVANDPKHPETDEAELS
CCCHHHHHHHHHEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]