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The map label for this gene is sodA [H]

Identifier: 218710835

GI number: 218710835

Start: 3069647

End: 3070264

Strand: Direct

Name: sodA [H]

Synonym: VS_2918

Alternate gene names: 218710835

Gene position: 3069647-3070264 (Clockwise)

Preceding gene: 218710834

Following gene: 218710836

Centisome position: 93.04

GC content: 49.19

Gene sequence:

>618_bases
ATGTCACACTCTTTTCCTGCTCTACCCTACGCCTACGACGCCCTAGAACCTTACATTGACGCTAAGACGATGGAAGTGCA
CTACAGCAAGCACCATAGAACCTACTACGATAAGTTTGTTGCGGCGATTTCTGGCAGTGAACTTGAGCAGCAATCTCTGA
CCGAGATCTTCGCTAACATCTCTCAGCACAGCCCTGCCGTTCGCAACAATGGCGGCGGTTACTACAACCATATTTTATAT
TGGAACTGCATGGCTCAAGATGGCGGGGGTGAACCAGCAGGTAAACTTGGCGACGCGATCCAAAGTACTTTCGGAGATTT
CGAGACGTTCCAAGATCAGTTCGCTCAAGCGGCAATCAATACCTTCGGTTCAGGCTTTGCTTGGTTGGTAGTAGAAGAAG
GACAACTGAAAATCATCTCGACCTCAAACCAAGACAACCCGTGGATGGATACCATCGCCAGCAACGGTGAGCCGATTCTT
GCACTGGATGTCTGGGAACACGCCTACTACATCAGCTACCAAAACCGTCGCCCTGATTACATCAATGCATGGTGGAACGT
GGTGAATTGGAATGCGGTTTCTGAAAACTACGCACAAGCACTCGCGAATAAAGCGTAA

Upstream 100 bases:

>100_bases
ACCCTGCCTATCCTGCCAGTGTAATACCCCTACAAAGATCACAGTTGATAATGATTTCCATTATCATTATGGTAAGTCCT
CTAATTAAGGAGGATTTACC

Downstream 100 bases:

>100_bases
GCCAATGGTGGTGAACTGTACTCACTCAGCTTGCCACCGTATACTCTGGCTATCTTTGATTATTCTTGTGAACCAACATG
TTTGATATCGCTCTATACGA

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MSHSFPALPYAYDALEPYIDAKTMEVHYSKHHRTYYDKFVAAISGSELEQQSLTEIFANISQHSPAVRNNGGGYYNHILY
WNCMAQDGGGEPAGKLGDAIQSTFGDFETFQDQFAQAAINTFGSGFAWLVVEEGQLKIISTSNQDNPWMDTIASNGEPIL
ALDVWEHAYYISYQNRRPDYINAWWNVVNWNAVSENYAQALANKA

Sequences:

>Translated_205_residues
MSHSFPALPYAYDALEPYIDAKTMEVHYSKHHRTYYDKFVAAISGSELEQQSLTEIFANISQHSPAVRNNGGGYYNHILY
WNCMAQDGGGEPAGKLGDAIQSTFGDFETFQDQFAQAAINTFGSGFAWLVVEEGQLKIISTSNQDNPWMDTIASNGEPIL
ALDVWEHAYYISYQNRRPDYINAWWNVVNWNAVSENYAQALANKA
>Mature_204_residues
SHSFPALPYAYDALEPYIDAKTMEVHYSKHHRTYYDKFVAAISGSELEQQSLTEIFANISQHSPAVRNNGGGYYNHILYW
NCMAQDGGGEPAGKLGDAIQSTFGDFETFQDQFAQAAINTFGSGFAWLVVEEGQLKIISTSNQDNPWMDTIASNGEPILA
LDVWEHAYYISYQNRRPDYINAWWNVVNWNAVSENYAQALANKA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=200, Percent_Identity=43.5, Blast_Score=171, Evalue=5e-43,
Organism=Homo sapiens, GI67782305, Length=200, Percent_Identity=43.5, Blast_Score=171, Evalue=5e-43,
Organism=Homo sapiens, GI67782309, Length=198, Percent_Identity=35.8585858585859, Blast_Score=124, Evalue=5e-29,
Organism=Escherichia coli, GI1787946, Length=199, Percent_Identity=48.2412060301507, Blast_Score=194, Evalue=5e-51,
Organism=Escherichia coli, GI1790342, Length=205, Percent_Identity=45.3658536585366, Blast_Score=190, Evalue=5e-50,
Organism=Caenorhabditis elegans, GI17506561, Length=208, Percent_Identity=39.4230769230769, Blast_Score=152, Evalue=1e-37,
Organism=Caenorhabditis elegans, GI17569479, Length=208, Percent_Identity=37.0192307692308, Blast_Score=148, Evalue=2e-36,
Organism=Saccharomyces cerevisiae, GI6321796, Length=211, Percent_Identity=36.0189573459716, Blast_Score=132, Evalue=3e-32,
Organism=Drosophila melanogaster, GI17136812, Length=202, Percent_Identity=36.6336633663366, Blast_Score=142, Evalue=1e-34,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23096; Mature: 22964

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHSFPALPYAYDALEPYIDAKTMEVHYSKHHRTYYDKFVAAISGSELEQQSLTEIFANI
CCCCCCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
SQHSPAVRNNGGGYYNHILYWNCMAQDGGGEPAGKLGDAIQSTFGDFETFQDQFAQAAIN
HHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHH
TFGSGFAWLVVEEGQLKIISTSNQDNPWMDTIASNGEPILALDVWEHAYYISYQNRRPDY
HCCCCEEEEEEECCCEEEEECCCCCCCHHHHHHCCCCEEEEEEECCCEEEEEECCCCCCH
INAWWNVVNWNAVSENYAQALANKA
HHHHHCEEECCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SHSFPALPYAYDALEPYIDAKTMEVHYSKHHRTYYDKFVAAISGSELEQQSLTEIFANI
CCCCCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
SQHSPAVRNNGGGYYNHILYWNCMAQDGGGEPAGKLGDAIQSTFGDFETFQDQFAQAAIN
HHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHH
TFGSGFAWLVVEEGQLKIISTSNQDNPWMDTIASNGEPILALDVWEHAYYISYQNRRPDY
HCCCCEEEEEEECCCEEEEECCCCCCCHHHHHHCCCCEEEEEEECCCEEEEEECCCCCCH
INAWWNVVNWNAVSENYAQALANKA
HHHHHCEEECCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1624106 [H]