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The map label for this gene is yoaB [C]

Identifier: 218710799

GI number: 218710799

Start: 3032148

End: 3032495

Strand: Reverse

Name: yoaB [C]

Synonym: VS_2882

Alternate gene names: 218710799

Gene position: 3032495-3032148 (Counterclockwise)

Preceding gene: 218710800

Following gene: 218710796

Centisome position: 91.91

GC content: 46.55

Gene sequence:

>348_bases
ATGATTGAGCGCCAAGAAACGAAGCAACGCATGAGCCGTATTGTTAAACACAACGGTACTATCTACCTATGTGGCCAAGT
TTGTGCTGATGCAACTAAAGACATCACAGAACAAACACAAACGATGCTGGATAAAGTGGAAGCCCTACTTGAGCAAGCGG
GCAGCGATAAAGAGCACATGCTGTCAGCAACGATTTACTTGAAAGACATGAAAGACTTCCAAGAAATGAACGCAGTATGG
GATGCATGGGTTCCTGAAGGTCACGCTCCAGCACGCGCATGTGTAACGGGTGATATGGCTCGTGAAGCGCTACTTGTTGA
GATCTCTGTGATTGCTGCTGAGAAGTAA

Upstream 100 bases:

>100_bases
GAATGCATGTCATCTTGGGTTTGATTCGCGTTATGCTTGTTGCCCTGATAATAACACGTCACAAGATATTGGATCACGGT
GACACAGAGAGATAAAGTCG

Downstream 100 bases:

>100_bases
TTGCTTAAAGCTTTTAGTGACGCAATGGCTTCAAGAGATTCCAGATACCTCGTCCCTCGGTTCTGGAATGACGAGTTTAG
TTTTGGTTTAGCTGATGCAT

Product: translation initiation inhibitor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MIERQETKQRMSRIVKHNGTIYLCGQVCADATKDITEQTQTMLDKVEALLEQAGSDKEHMLSATIYLKDMKDFQEMNAVW
DAWVPEGHAPARACVTGDMAREALLVEISVIAAEK

Sequences:

>Translated_115_residues
MIERQETKQRMSRIVKHNGTIYLCGQVCADATKDITEQTQTMLDKVEALLEQAGSDKEHMLSATIYLKDMKDFQEMNAVW
DAWVPEGHAPARACVTGDMAREALLVEISVIAAEK
>Mature_115_residues
MIERQETKQRMSRIVKHNGTIYLCGQVCADATKDITEQTQTMLDKVEALLEQAGSDKEHMLSATIYLKDMKDFQEMNAVW
DAWVPEGHAPARACVTGDMAREALLVEISVIAAEK

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=112, Percent_Identity=42.8571428571429, Blast_Score=93, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 12898; Mature: 12898

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
8.7 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
8.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIERQETKQRMSRIVKHNGTIYLCGQVCADATKDITEQTQTMLDKVEALLEQAGSDKEHM
CCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LSATIYLKDMKDFQEMNAVWDAWVPEGHAPARACVTGDMAREALLVEISVIAAEK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCC
>Mature Secondary Structure
MIERQETKQRMSRIVKHNGTIYLCGQVCADATKDITEQTQTMLDKVEALLEQAGSDKEHM
CCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LSATIYLKDMKDFQEMNAVWDAWVPEGHAPARACVTGDMAREALLVEISVIAAEK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA