| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
Click here to switch to the map view.
The map label for this gene is yciR [C]
Identifier: 218710780
GI number: 218710780
Start: 3008012
End: 3010498
Strand: Direct
Name: yciR [C]
Synonym: VS_2863
Alternate gene names: 218710780
Gene position: 3008012-3010498 (Clockwise)
Preceding gene: 218710774
Following gene: 218710782
Centisome position: 91.17
GC content: 39.0
Gene sequence:
>2487_bases ATGAAAGAGAACAAGCTCGTCTACCTAATTCGTTACATACCGACTATAACTGTGGTTCTATTCTCTATTATCGTCTTTTC GTTATCGGTCAATGATAGTTATCGACGAACCAATCAAGAAATCACTCACATAGAGTCCGACATTGTTGAAGAAAAAAAAG CCTATTTAAAATCTCAAGTCAGCTATGTCAACAAGCAGCTCAACTACTTAGAAGAAACAACAATAACCACACTACGCGAC AGTATAAAAACTCATACTCTCCGCACTCACTCGATACTAAATCAACTATACAAAGACAACCCACAATTAAGTGAACAAGA GTTTACAACCTTGGTTCGTTCGAGTTTGAAAAACTACAGATTCAATGACGGTCGTGGTTACCCTTTTATTTACCACCATG ATGGGACTGTTATTTTCCACCCTATATTTCCTAGCTCCCAAGGAGCTTCCCGATGGGACTATAAAGATGCTAAAGGACAC TTTATTGCTCAGGAATTAACCAAGAAAGCAATTAAAGAAAAGGAAGGCTTTCATAAATGGTGGTTTATAAAGCCGAATAC ATTCGCAAAACAGTATGAAAAAATCGGCTATATTGTCAATTTCTCGCCATATAATTGGTACATAGGTACAAGTGACTTTA TTACAGATGTCCAGGCAGACATTCAAAGTGACGTGCTCGAATGGTTAAGTCAGCTTCAAATTGGTCAACAGAGTAACTTC TACGTTATCGACACTAAAGGCGATGTGCTGGCTCATACCACCCCTGGCTTTATTGACACTAATATCCATAACATTCAAAA CATACACTTCCGCACTCAAGCAGTCGCGCTGTTGGAACAATCGGATGTCTATGTTAGACACTTAGCTGCCGACAATCACT CGTTAGAAAACCTTAGTTATGTCATCAAAAATAGTACTTGGGGCTGGACGATAGGCGCGAGCTTTAGTGTCACTGCATTA GAAAGACTTGTAGCTAAAAAAAATGCCGAGTTGATTGAAAAAAGAAATGATGAGCTCAATCGCTTAGCACTCATGTATAG CATAGTCGTTCTATTAGTCGGACTACTCTCATATTATGTAAGCACTCTAGTTTCTCGTCGCTTTGAATCTTATCAAGCTG AAATTCAATCTGACTTTGAAAAGCTCTGTACTGCAAACAGCACGCTGAATCACTTTGCTAATCATGACCAACTGACTGGG CTTTTTAATCGACACTTTTTTGAAGTCTATATGGAGAAAGAGCTGGCCAAAACTCAATCAGATGACGATAAATTTCTTGT CTGTTTTATTGATGTAGATAACTTTAAAAACATCAACGACTACTACGGACACAGTGTTGGGGACGAACTCTTAATACAGA TATCTCAAACGCTTAAAAAAGTATGCCCTAATTTTTCAGAAGTGTTCCGGTTCGGAGGTGATGAATTTATTGTTACTTTC CCTGCTCTAAACAGCCTAAAACAGGCAGAAAGCGTCATGAAACTATTTCATGATGAACTTGCGACCAAGTATCAATGCTT TGAGCATGAATTTGATATCAGTTTTAGCTTAGGTGCCGCCTTGTATCCCGATCACGGACGCACTGTCGATGAGTTACTCG CAAGCTCTGATATTATGCTCCATTCTGTGAAATCAGAAGGCAAAGCAAACTGTGCTATTTTCTCATCAAAAACCTCTGCG AAAAATCAACGTAAATTTCTGATTGAAGACAATTTACTTACCGCTATAGAAAGAAGAGAAATTTATTTAGATTATCAGCC TCAGTATTGCTTACAGTCTGGAAGGTTATGGGGAATCGAAGCGCTAGCTCGATGGAAAAGCCCAACATTGGGTAACGTTT ACCCTGATGAATTTATCTCCGTCGCTGAAGTCAGTGGTCACATACGCGCATTAGGTTGGTATCTTATTGAATTAGCCTAC CAACAGTATTCAGAACTCGATTTTCCAGACGATGCTCCTATTTTACTGGCACTGAACTTATCACCAGTTCAAATTGGTGA AACAAACTTTGCTGAAAATATCATTAAAATAACAGAGCGCTACGGTATAAACCCATCCCATATATGCCTAGAAGCCACCG AAGGCATCATGCTAAAAAATCCGGAAGAGGTAGCAAAAGTTGCGTATCAACTTCGTAGTAAAGGGTTTCACTTGGCCTTA GATGATTTTGGTACTGGGTACTCTTCGTTGAAGTATTTGTCATTACTTCCTATTCATGAAATTAAAATAGATCGTAGCTT TATTTGGCAACTTTCAGAATCGAATACCGCTCATGAACTATTAAAAAGCATTGTCGCAATTGGGCGGTCTACAGGAACAA GAACCGTCGCTGAAGGTGTCGAAACCATTGAACAACTAGAATACGTTAAACAATATGGATGTGACATTGTCCAAGGGTAC TTATTTTCAAAACCGGTATCACTGGAAAAAGCGGTACAAATACGCCAATACGACCTTGAAAAGATGGAATCATACCAATC ACAGTAA
Upstream 100 bases:
>100_bases GGTTTTTTATGACATGGTTCTTTTTTTGTGAAAAATAACAACTCAATGAATAATTGTTTGAGTTATCATTAGCGTGAATT TACTGACCTTTAATAGAAAA
Downstream 100 bases:
>100_bases GTAAGTGTTCAAAAATAGCGCAGGAAAAAAGCTTGAGAACAAGGCGGATGTTTTTGATAAGTAGTTATTCTACAATCAAA AAATCTAACGACGTTATCTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 828; Mature: 828
Protein sequence:
>828_residues MKENKLVYLIRYIPTITVVLFSIIVFSLSVNDSYRRTNQEITHIESDIVEEKKAYLKSQVSYVNKQLNYLEETTITTLRD SIKTHTLRTHSILNQLYKDNPQLSEQEFTTLVRSSLKNYRFNDGRGYPFIYHHDGTVIFHPIFPSSQGASRWDYKDAKGH FIAQELTKKAIKEKEGFHKWWFIKPNTFAKQYEKIGYIVNFSPYNWYIGTSDFITDVQADIQSDVLEWLSQLQIGQQSNF YVIDTKGDVLAHTTPGFIDTNIHNIQNIHFRTQAVALLEQSDVYVRHLAADNHSLENLSYVIKNSTWGWTIGASFSVTAL ERLVAKKNAELIEKRNDELNRLALMYSIVVLLVGLLSYYVSTLVSRRFESYQAEIQSDFEKLCTANSTLNHFANHDQLTG LFNRHFFEVYMEKELAKTQSDDDKFLVCFIDVDNFKNINDYYGHSVGDELLIQISQTLKKVCPNFSEVFRFGGDEFIVTF PALNSLKQAESVMKLFHDELATKYQCFEHEFDISFSLGAALYPDHGRTVDELLASSDIMLHSVKSEGKANCAIFSSKTSA KNQRKFLIEDNLLTAIERREIYLDYQPQYCLQSGRLWGIEALARWKSPTLGNVYPDEFISVAEVSGHIRALGWYLIELAY QQYSELDFPDDAPILLALNLSPVQIGETNFAENIIKITERYGINPSHICLEATEGIMLKNPEEVAKVAYQLRSKGFHLAL DDFGTGYSSLKYLSLLPIHEIKIDRSFIWQLSESNTAHELLKSIVAIGRSTGTRTVAEGVETIEQLEYVKQYGCDIVQGY LFSKPVSLEKAVQIRQYDLEKMESYQSQ
Sequences:
>Translated_828_residues MKENKLVYLIRYIPTITVVLFSIIVFSLSVNDSYRRTNQEITHIESDIVEEKKAYLKSQVSYVNKQLNYLEETTITTLRD SIKTHTLRTHSILNQLYKDNPQLSEQEFTTLVRSSLKNYRFNDGRGYPFIYHHDGTVIFHPIFPSSQGASRWDYKDAKGH FIAQELTKKAIKEKEGFHKWWFIKPNTFAKQYEKIGYIVNFSPYNWYIGTSDFITDVQADIQSDVLEWLSQLQIGQQSNF YVIDTKGDVLAHTTPGFIDTNIHNIQNIHFRTQAVALLEQSDVYVRHLAADNHSLENLSYVIKNSTWGWTIGASFSVTAL ERLVAKKNAELIEKRNDELNRLALMYSIVVLLVGLLSYYVSTLVSRRFESYQAEIQSDFEKLCTANSTLNHFANHDQLTG LFNRHFFEVYMEKELAKTQSDDDKFLVCFIDVDNFKNINDYYGHSVGDELLIQISQTLKKVCPNFSEVFRFGGDEFIVTF PALNSLKQAESVMKLFHDELATKYQCFEHEFDISFSLGAALYPDHGRTVDELLASSDIMLHSVKSEGKANCAIFSSKTSA KNQRKFLIEDNLLTAIERREIYLDYQPQYCLQSGRLWGIEALARWKSPTLGNVYPDEFISVAEVSGHIRALGWYLIELAY QQYSELDFPDDAPILLALNLSPVQIGETNFAENIIKITERYGINPSHICLEATEGIMLKNPEEVAKVAYQLRSKGFHLAL DDFGTGYSSLKYLSLLPIHEIKIDRSFIWQLSESNTAHELLKSIVAIGRSTGTRTVAEGVETIEQLEYVKQYGCDIVQGY LFSKPVSLEKAVQIRQYDLEKMESYQSQ >Mature_828_residues MKENKLVYLIRYIPTITVVLFSIIVFSLSVNDSYRRTNQEITHIESDIVEEKKAYLKSQVSYVNKQLNYLEETTITTLRD SIKTHTLRTHSILNQLYKDNPQLSEQEFTTLVRSSLKNYRFNDGRGYPFIYHHDGTVIFHPIFPSSQGASRWDYKDAKGH FIAQELTKKAIKEKEGFHKWWFIKPNTFAKQYEKIGYIVNFSPYNWYIGTSDFITDVQADIQSDVLEWLSQLQIGQQSNF YVIDTKGDVLAHTTPGFIDTNIHNIQNIHFRTQAVALLEQSDVYVRHLAADNHSLENLSYVIKNSTWGWTIGASFSVTAL ERLVAKKNAELIEKRNDELNRLALMYSIVVLLVGLLSYYVSTLVSRRFESYQAEIQSDFEKLCTANSTLNHFANHDQLTG LFNRHFFEVYMEKELAKTQSDDDKFLVCFIDVDNFKNINDYYGHSVGDELLIQISQTLKKVCPNFSEVFRFGGDEFIVTF PALNSLKQAESVMKLFHDELATKYQCFEHEFDISFSLGAALYPDHGRTVDELLASSDIMLHSVKSEGKANCAIFSSKTSA KNQRKFLIEDNLLTAIERREIYLDYQPQYCLQSGRLWGIEALARWKSPTLGNVYPDEFISVAEVSGHIRALGWYLIELAY QQYSELDFPDDAPILLALNLSPVQIGETNFAENIIKITERYGINPSHICLEATEGIMLKNPEEVAKVAYQLRSKGFHLAL DDFGTGYSSLKYLSLLPIHEIKIDRSFIWQLSESNTAHELLKSIVAIGRSTGTRTVAEGVETIEQLEYVKQYGCDIVQGY LFSKPVSLEKAVQIRQYDLEKMESYQSQ
Specific function: Unknown
COG id: COG5001
COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 MHYT domain [H]
Homologues:
Organism=Escherichia coli, GI1787541, Length=427, Percent_Identity=31.8501170960187, Blast_Score=211, Evalue=1e-55, Organism=Escherichia coli, GI87081921, Length=419, Percent_Identity=30.5489260143198, Blast_Score=199, Evalue=6e-52, Organism=Escherichia coli, GI1788502, Length=242, Percent_Identity=34.7107438016529, Blast_Score=145, Evalue=8e-36, Organism=Escherichia coli, GI226510982, Length=434, Percent_Identity=25.1152073732719, Blast_Score=142, Evalue=7e-35, Organism=Escherichia coli, GI87081845, Length=246, Percent_Identity=35.7723577235772, Blast_Score=130, Evalue=4e-31, Organism=Escherichia coli, GI1787055, Length=243, Percent_Identity=32.9218106995885, Blast_Score=129, Evalue=7e-31, Organism=Escherichia coli, GI1786507, Length=240, Percent_Identity=33.3333333333333, Blast_Score=129, Evalue=1e-30, Organism=Escherichia coli, GI1790496, Length=242, Percent_Identity=31.404958677686, Blast_Score=127, Evalue=3e-30, Organism=Escherichia coli, GI87081743, Length=242, Percent_Identity=35.5371900826446, Blast_Score=122, Evalue=6e-29, Organism=Escherichia coli, GI87081980, Length=239, Percent_Identity=32.2175732217573, Blast_Score=105, Evalue=1e-23, Organism=Escherichia coli, GI87082096, Length=467, Percent_Identity=23.3404710920771, Blast_Score=98, Evalue=2e-21, Organism=Escherichia coli, GI1788849, Length=246, Percent_Identity=29.6747967479675, Blast_Score=92, Evalue=1e-19, Organism=Escherichia coli, GI145693134, Length=173, Percent_Identity=32.3699421965318, Blast_Score=87, Evalue=6e-18, Organism=Escherichia coli, GI87081881, Length=199, Percent_Identity=30.6532663316583, Blast_Score=84, Evalue=4e-17, Organism=Escherichia coli, GI1786584, Length=168, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=4e-17, Organism=Escherichia coli, GI1787056, Length=200, Percent_Identity=29.5, Blast_Score=79, Evalue=1e-15, Organism=Escherichia coli, GI1788381, Length=178, Percent_Identity=26.4044943820225, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI87081977, Length=131, Percent_Identity=32.824427480916, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI1788956, Length=160, Percent_Identity=28.75, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1787816, Length=184, Percent_Identity=24.4565217391304, Blast_Score=67, Evalue=6e-12, Organism=Escherichia coli, GI1788085, Length=163, Percent_Identity=30.0613496932515, Blast_Score=66, Evalue=1e-11, Organism=Escherichia coli, GI1787410, Length=168, Percent_Identity=25.5952380952381, Blast_Score=66, Evalue=1e-11, Organism=Escherichia coli, GI1787802, Length=161, Percent_Identity=29.1925465838509, Blast_Score=64, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR000160 - InterPro: IPR001633 - InterPro: IPR005330 [H]
Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]
EC number: NA
Molecular weight: Translated: 95171; Mature: 95171
Theoretical pI: Translated: 5.91; Mature: 5.91
Prosite motif: PS50883 EAL ; PS50887 GGDEF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKENKLVYLIRYIPTITVVLFSIIVFSLSVNDSYRRTNQEITHIESDIVEEKKAYLKSQV CCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHH SYVNKQLNYLEETTITTLRDSIKTHTLRTHSILNQLYKDNPQLSEQEFTTLVRSSLKNYR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC FNDGRGYPFIYHHDGTVIFHPIFPSSQGASRWDYKDAKGHFIAQELTKKAIKEKEGFHKW CCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEE WFIKPNTFAKQYEKIGYIVNFSPYNWYIGTSDFITDVQADIQSDVLEWLSQLQIGQQSNF EEECCCHHHHHHHHCCEEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE YVIDTKGDVLAHTTPGFIDTNIHNIQNIHFRTQAVALLEQSDVYVRHLAADNHSLENLSY EEEECCCCEEEECCCCCEECCCHHHHHHHHHHHHHHHHHHCCHHHEEHHCCCCCHHHHHE VIKNSTWGWTIGASFSVTALERLVAKKNAELIEKRNDELNRLALMYSIVVLLVGLLSYYV EEECCCCCEEECCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH STLVSRRFESYQAEIQSDFEKLCTANSTLNHFANHDQLTGLFNRHFFEVYMEKELAKTQS HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC DDDKFLVCFIDVDNFKNINDYYGHSVGDELLIQISQTLKKVCPNFSEVFRFGGDEFIVTF CCCCEEEEEEECCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEEC PALNSLKQAESVMKLFHDELATKYQCFEHEFDISFSLGAALYPDHGRTVDELLASSDIML CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEECCCCCCCHHHHHCCCCHHE HSVKSEGKANCAIFSSKTSAKNQRKFLIEDNLLTAIERREIYLDYQPQYCLQSGRLWGIE EECCCCCCCCEEEEECCCCCCCCCEEEEECHHHHHHHHCEEEEECCHHHHHHCCCEECHH ALARWKSPTLGNVYPDEFISVAEVSGHIRALGWYLIELAYQQYSELDFPDDAPILLALNL HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC SPVQIGETNFAENIIKITERYGINPSHICLEATEGIMLKNPEEVAKVAYQLRSKGFHLAL CCEEECCCHHHHHHHHHHHHCCCCHHHEEEEECCCCEECCHHHHHHHHHHHHHCCCEEEE DDFGTGYSSLKYLSLLPIHEIKIDRSFIWQLSESNTAHELLKSIVAIGRSTGTRTVAEGV CCCCCCHHHHHHHHCCCHHHEEECHHHHEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHH ETIEQLEYVKQYGCDIVQGYLFSKPVSLEKAVQIRQYDLEKMESYQSQ HHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKENKLVYLIRYIPTITVVLFSIIVFSLSVNDSYRRTNQEITHIESDIVEEKKAYLKSQV CCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHH SYVNKQLNYLEETTITTLRDSIKTHTLRTHSILNQLYKDNPQLSEQEFTTLVRSSLKNYR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC FNDGRGYPFIYHHDGTVIFHPIFPSSQGASRWDYKDAKGHFIAQELTKKAIKEKEGFHKW CCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEE WFIKPNTFAKQYEKIGYIVNFSPYNWYIGTSDFITDVQADIQSDVLEWLSQLQIGQQSNF EEECCCHHHHHHHHCCEEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE YVIDTKGDVLAHTTPGFIDTNIHNIQNIHFRTQAVALLEQSDVYVRHLAADNHSLENLSY EEEECCCCEEEECCCCCEECCCHHHHHHHHHHHHHHHHHHCCHHHEEHHCCCCCHHHHHE VIKNSTWGWTIGASFSVTALERLVAKKNAELIEKRNDELNRLALMYSIVVLLVGLLSYYV EEECCCCCEEECCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH STLVSRRFESYQAEIQSDFEKLCTANSTLNHFANHDQLTGLFNRHFFEVYMEKELAKTQS HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC DDDKFLVCFIDVDNFKNINDYYGHSVGDELLIQISQTLKKVCPNFSEVFRFGGDEFIVTF CCCCEEEEEEECCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEEC PALNSLKQAESVMKLFHDELATKYQCFEHEFDISFSLGAALYPDHGRTVDELLASSDIML CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEECCCCCCCHHHHHCCCCHHE HSVKSEGKANCAIFSSKTSAKNQRKFLIEDNLLTAIERREIYLDYQPQYCLQSGRLWGIE EECCCCCCCCEEEEECCCCCCCCCEEEEECHHHHHHHHCEEEEECCHHHHHHCCCEECHH ALARWKSPTLGNVYPDEFISVAEVSGHIRALGWYLIELAYQQYSELDFPDDAPILLALNL HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC SPVQIGETNFAENIIKITERYGINPSHICLEATEGIMLKNPEEVAKVAYQLRSKGFHLAL CCEEECCCHHHHHHHHHHHHCCCCHHHEEEEECCCCEECCHHHHHHHHHHHHHCCCEEEE DDFGTGYSSLKYLSLLPIHEIKIDRSFIWQLSESNTAHELLKSIVAIGRSTGTRTVAEGV CCCCCCHHHHHHHHCCCHHHEEECHHHHEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHH ETIEQLEYVKQYGCDIVQGYLFSKPVSLEKAVQIRQYDLEKMESYQSQ HHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]