| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
Click here to switch to the map view.
The map label for this gene is ybbA [C]
Identifier: 218710699
GI number: 218710699
Start: 2945077
End: 2945769
Strand: Direct
Name: ybbA [C]
Synonym: VS_2782
Alternate gene names: 218710699
Gene position: 2945077-2945769 (Clockwise)
Preceding gene: 218710698
Following gene: 218710700
Centisome position: 89.26
GC content: 45.31
Gene sequence:
>693_bases GTGGTCAAACTCGAAAATATCAGCTTTCGTTGGAAGCCTGAATTACCCCCAACGCTAGAGATCCCCTCACTGCATATCCA AGCCCAAGAGCACCTTTTCATCAAAGGGCCTAGTGGTTGCGGGAAATCAACATTGTTAGGGTTACTGACCGGAATCAACC AAGCTGAACAAGGCGAAGTATCTATCCTTGGCCAAGACCTCACACAGCTAACACCTCGTCAGAGGGACAAGTTCAGAGCC GATCATATTGGCTATATATTCCAACAATTTAATCTGCTTCCTTACTTGTCAGTGATCGACAACGTGACGCTTCCTTGTCA GTTTTCTAAGATTCGTAAGCAGCAAGTCACTGAAAGTCAGAACAGCCTGCAAGCAACCGCTCAAGAGTTGTTACTACGAT TAAAGCTACCTCAAGCTCTAATGGTCAAGCCTGTTACCGAATTGAGCATTGGTCAACAACAACGTGTTGCTGCCGCTCGT GCTTTGATCGGCCAACCGAAAATCATTATTGCCGACGAGCCAACCTCGGCTTTGGATCATGACAACCGAGAAGCCTTCAT CGAATTGTTACTAGAGCAAGCAAATCAAGCCGGGTCTACTCTGATATTTGTCAGTCACGATCCAACATTAGAAAAGCTAT TCACTCGAACCATAGATTTAAAAACCGTTAACCAAGCTAAGGTTGTCGTATGA
Upstream 100 bases:
>100_bases CAAATCGGTGTGTTCTGGGAATTTATTTTTCTAATAGCTGTCCAGTAAATACACCGCTTTAATCATTGGAGCTAATATGT CTTTTGACAGTTCATCACTT
Downstream 100 bases:
>100_bases AAGTAATTACTCACTTAGCCCTAAAAAGCGTACTCAACCGTAAAGCCACCGCTATTCTGACGATTCTCACCGTGGCAGTG TCAGTGATTCTATTACTCGG
Product: ABC transporter nucleotide-binding domain
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 230; Mature: 230
Protein sequence:
>230_residues MVKLENISFRWKPELPPTLEIPSLHIQAQEHLFIKGPSGCGKSTLLGLLTGINQAEQGEVSILGQDLTQLTPRQRDKFRA DHIGYIFQQFNLLPYLSVIDNVTLPCQFSKIRKQQVTESQNSLQATAQELLLRLKLPQALMVKPVTELSIGQQQRVAAAR ALIGQPKIIIADEPTSALDHDNREAFIELLLEQANQAGSTLIFVSHDPTLEKLFTRTIDLKTVNQAKVVV
Sequences:
>Translated_230_residues MVKLENISFRWKPELPPTLEIPSLHIQAQEHLFIKGPSGCGKSTLLGLLTGINQAEQGEVSILGQDLTQLTPRQRDKFRA DHIGYIFQQFNLLPYLSVIDNVTLPCQFSKIRKQQVTESQNSLQATAQELLLRLKLPQALMVKPVTELSIGQQQRVAAAR ALIGQPKIIIADEPTSALDHDNREAFIELLLEQANQAGSTLIFVSHDPTLEKLFTRTIDLKTVNQAKVVV >Mature_230_residues MVKLENISFRWKPELPPTLEIPSLHIQAQEHLFIKGPSGCGKSTLLGLLTGINQAEQGEVSILGQDLTQLTPRQRDKFRA DHIGYIFQQFNLLPYLSVIDNVTLPCQFSKIRKQQVTESQNSLQATAQELLLRLKLPQALMVKPVTELSIGQQQRVAAAR ALIGQPKIIIADEPTSALDHDNREAFIELLLEQANQAGSTLIFVSHDPTLEKLFTRTIDLKTVNQAKVVV
Specific function: Unknown
COG id: COG1136
COG function: function code V; ABC-type antimicrobial peptide transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI171184400, Length=218, Percent_Identity=31.651376146789, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI255708477, Length=211, Percent_Identity=31.2796208530806, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI42741659, Length=190, Percent_Identity=32.6315789473684, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI215820660, Length=201, Percent_Identity=32.3383084577114, Blast_Score=77, Evalue=9e-15, Organism=Homo sapiens, GI20143975, Length=201, Percent_Identity=32.3383084577114, Blast_Score=77, Evalue=9e-15, Organism=Homo sapiens, GI9955963, Length=212, Percent_Identity=33.0188679245283, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI9961252, Length=197, Percent_Identity=29.9492385786802, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI4505771, Length=197, Percent_Identity=29.9492385786802, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI9961250, Length=197, Percent_Identity=29.9492385786802, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI21536378, Length=185, Percent_Identity=31.8918918918919, Blast_Score=74, Evalue=8e-14, Organism=Homo sapiens, GI21536376, Length=171, Percent_Identity=27.4853801169591, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI46592964, Length=204, Percent_Identity=30.8823529411765, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI46592956, Length=204, Percent_Identity=30.8823529411765, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI46592915, Length=204, Percent_Identity=30.8823529411765, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI46592978, Length=204, Percent_Identity=30.8823529411765, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI46592898, Length=204, Percent_Identity=30.8823529411765, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI46592971, Length=204, Percent_Identity=30.8823529411765, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI156105685, Length=190, Percent_Identity=32.6315789473684, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI153792144, Length=161, Percent_Identity=30.4347826086957, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI27436953, Length=161, Percent_Identity=31.055900621118, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI11967969, Length=192, Percent_Identity=28.6458333333333, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI148612844, Length=190, Percent_Identity=30, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI1786703, Length=195, Percent_Identity=40, Blast_Score=134, Evalue=6e-33, Organism=Escherichia coli, GI1787105, Length=200, Percent_Identity=39, Blast_Score=127, Evalue=7e-31, Organism=Escherichia coli, GI87081834, Length=223, Percent_Identity=31.8385650224215, Blast_Score=117, Evalue=7e-28, Organism=Escherichia coli, GI1787712, Length=186, Percent_Identity=38.1720430107527, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1786398, Length=209, Percent_Identity=36.3636363636364, Blast_Score=107, Evalue=6e-25, Organism=Escherichia coli, GI1789672, Length=219, Percent_Identity=33.7899543378995, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1787029, Length=219, Percent_Identity=33.7899543378995, Blast_Score=104, Evalue=5e-24, Organism=Escherichia coli, GI1789873, Length=212, Percent_Identity=33.9622641509434, Blast_Score=103, Evalue=7e-24, Organism=Escherichia coli, GI87081709, Length=207, Percent_Identity=32.3671497584541, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1786872, Length=203, Percent_Identity=35.4679802955665, Blast_Score=100, Evalue=6e-23, Organism=Escherichia coli, GI1786563, Length=191, Percent_Identity=34.0314136125654, Blast_Score=100, Evalue=8e-23, Organism=Escherichia coli, GI1787370, Length=185, Percent_Identity=32.4324324324324, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1790467, Length=209, Percent_Identity=31.1004784688995, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI87081791, Length=207, Percent_Identity=32.8502415458937, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI87082267, Length=211, Percent_Identity=32.2274881516588, Blast_Score=98, Evalue=4e-22, Organism=Escherichia coli, GI1787500, Length=202, Percent_Identity=33.6633663366337, Blast_Score=97, Evalue=7e-22, Organism=Escherichia coli, GI1790544, Length=204, Percent_Identity=37.7450980392157, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI1787089, Length=189, Percent_Identity=37.5661375661376, Blast_Score=94, Evalue=7e-21, Organism=Escherichia coli, GI1788225, Length=216, Percent_Identity=35.1851851851852, Blast_Score=94, Evalue=7e-21, Organism=Escherichia coli, GI1788761, Length=190, Percent_Identity=32.1052631578947, Blast_Score=94, Evalue=8e-21, Organism=Escherichia coli, GI1786253, Length=208, Percent_Identity=34.6153846153846, Blast_Score=92, Evalue=2e-20, Organism=Escherichia coli, GI1789891, Length=213, Percent_Identity=32.8638497652582, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1789032, Length=185, Percent_Identity=32.972972972973, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI48995001, Length=181, Percent_Identity=32.5966850828729, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1786698, Length=185, Percent_Identity=31.3513513513514, Blast_Score=88, Evalue=4e-19, Organism=Escherichia coli, GI1790534, Length=195, Percent_Identity=31.2820512820513, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1787759, Length=192, Percent_Identity=31.7708333333333, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1790190, Length=188, Percent_Identity=32.4468085106383, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1789962, Length=185, Percent_Identity=32.4324324324324, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787164, Length=185, Percent_Identity=34.5945945945946, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI1788450, Length=190, Percent_Identity=30.5263157894737, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI48994943, Length=171, Percent_Identity=32.1637426900585, Blast_Score=81, Evalue=5e-17, Organism=Escherichia coli, GI1787758, Length=205, Percent_Identity=31.219512195122, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1786319, Length=199, Percent_Identity=29.1457286432161, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI145693107, Length=211, Percent_Identity=32.2274881516588, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1788897, Length=194, Percent_Identity=28.8659793814433, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI48994883, Length=194, Percent_Identity=31.9587628865979, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786975, Length=201, Percent_Identity=32.3383084577114, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1790525, Length=172, Percent_Identity=29.6511627906977, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1788644, Length=216, Percent_Identity=29.6296296296296, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1789963, Length=219, Percent_Identity=28.7671232876712, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1788053, Length=213, Percent_Identity=31.4553990610329, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1788165, Length=228, Percent_Identity=28.0701754385965, Blast_Score=70, Evalue=9e-14, Organism=Escherichia coli, GI1788506, Length=196, Percent_Identity=38.265306122449, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI87081782, Length=171, Percent_Identity=28.0701754385965, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787143, Length=216, Percent_Identity=28.2407407407407, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1786803, Length=195, Percent_Identity=31.7948717948718, Blast_Score=67, Evalue=7e-13, Organism=Escherichia coli, GI1790162, Length=179, Percent_Identity=31.8435754189944, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1789864, Length=196, Percent_Identity=26.530612244898, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI48994997, Length=207, Percent_Identity=26.0869565217391, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787547, Length=190, Percent_Identity=30.5263157894737, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1787182, Length=218, Percent_Identity=27.9816513761468, Blast_Score=64, Evalue=6e-12, Organism=Escherichia coli, GI1789991, Length=201, Percent_Identity=28.3582089552239, Blast_Score=64, Evalue=6e-12, Organism=Escherichia coli, GI1786654, Length=205, Percent_Identity=27.3170731707317, Blast_Score=61, Evalue=5e-11, Organism=Escherichia coli, GI1788210, Length=183, Percent_Identity=32.2404371584699, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17558664, Length=210, Percent_Identity=33.8095238095238, Blast_Score=90, Evalue=8e-19, Organism=Caenorhabditis elegans, GI17541710, Length=210, Percent_Identity=31.9047619047619, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI25146777, Length=210, Percent_Identity=32.3809523809524, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17567269, Length=207, Percent_Identity=32.8502415458937, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI193202349, Length=211, Percent_Identity=32.7014218009479, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI212646699, Length=224, Percent_Identity=30.3571428571429, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI193211017, Length=219, Percent_Identity=31.0502283105023, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193211015, Length=219, Percent_Identity=31.0502283105023, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71996809, Length=219, Percent_Identity=31.0502283105023, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71984940, Length=229, Percent_Identity=27.9475982532751, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17567265, Length=207, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193208177, Length=215, Percent_Identity=27.906976744186, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17533971, Length=223, Percent_Identity=28.2511210762332, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17569143, Length=206, Percent_Identity=30.0970873786408, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI115534520, Length=179, Percent_Identity=33.5195530726257, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17569145, Length=209, Percent_Identity=28.7081339712919, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71992290, Length=220, Percent_Identity=28.1818181818182, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6323217, Length=224, Percent_Identity=31.6964285714286, Blast_Score=73, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6324985, Length=209, Percent_Identity=28.7081339712919, Blast_Score=72, Evalue=6e-14, Organism=Saccharomyces cerevisiae, GI6321752, Length=219, Percent_Identity=26.4840182648402, Blast_Score=71, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6323959, Length=208, Percent_Identity=28.3653846153846, Blast_Score=65, Evalue=9e-12, Organism=Drosophila melanogaster, GI281363262, Length=211, Percent_Identity=29.8578199052133, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24653245, Length=211, Percent_Identity=29.8578199052133, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24581191, Length=199, Percent_Identity=31.1557788944724, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24581189, Length=199, Percent_Identity=31.1557788944724, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24581193, Length=199, Percent_Identity=31.1557788944724, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24581195, Length=199, Percent_Identity=31.1557788944724, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24641565, Length=237, Percent_Identity=30.379746835443, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24659289, Length=211, Percent_Identity=30.8056872037915, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI85726357, Length=233, Percent_Identity=29.6137339055794, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28574533, Length=186, Percent_Identity=36.0215053763441, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24666092, Length=173, Percent_Identity=31.2138728323699, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI85725262, Length=174, Percent_Identity=30.4597701149425, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI85724864, Length=205, Percent_Identity=30.2439024390244, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24580555, Length=205, Percent_Identity=30.2439024390244, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI85816269, Length=205, Percent_Identity=30.2439024390244, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24580553, Length=205, Percent_Identity=30.2439024390244, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI17136662, Length=208, Percent_Identity=31.25, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24582014, Length=174, Percent_Identity=29.3103448275862, Blast_Score=64, Evalue=6e-11, Organism=Drosophila melanogaster, GI24582012, Length=174, Percent_Identity=29.3103448275862, Blast_Score=64, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 25677; Mature: 25677
Theoretical pI: Translated: 7.63; Mature: 7.63
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVKLENISFRWKPELPPTLEIPSLHIQAQEHLFIKGPSGCGKSTLLGLLTGINQAEQGEV CEEECCCCEEECCCCCCCCCCCCEEEEEECEEEEECCCCCCHHHHHHHHHCCCCCCCCCE SILGQDLTQLTPRQRDKFRADHIGYIFQQFNLLPYLSVIDNVTLPCQFSKIRKQQVTESQ EEECCHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHH NSLQATAQELLLRLKLPQALMVKPVTELSIGQQQRVAAARALIGQPKIIIADEPTSALDH HHHHHHHHHHHHHHCCCHHHHHCCHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCHHHCC DNREAFIELLLEQANQAGSTLIFVSHDPTLEKLFTRTIDLKTVNQAKVVV CCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCEEECCCCEECC >Mature Secondary Structure MVKLENISFRWKPELPPTLEIPSLHIQAQEHLFIKGPSGCGKSTLLGLLTGINQAEQGEV CEEECCCCEEECCCCCCCCCCCCEEEEEECEEEEECCCCCCHHHHHHHHHCCCCCCCCCE SILGQDLTQLTPRQRDKFRADHIGYIFQQFNLLPYLSVIDNVTLPCQFSKIRKQQVTESQ EEECCHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHH NSLQATAQELLLRLKLPQALMVKPVTELSIGQQQRVAAARALIGQPKIIIADEPTSALDH HHHHHHHHHHHHHHCCCHHHHHCCHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCHHHCC DNREAFIELLLEQANQAGSTLIFVSHDPTLEKLFTRTIDLKTVNQAKVVV CCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCEEECCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]