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The map label for this gene is ytfM [H]

Identifier: 218710694

GI number: 218710694

Start: 2939829

End: 2941541

Strand: Reverse

Name: ytfM [H]

Synonym: VS_2775

Alternate gene names: 218710694

Gene position: 2941541-2939829 (Counterclockwise)

Preceding gene: 218710703

Following gene: 218710693

Centisome position: 89.16

GC content: 43.55

Gene sequence:

>1713_bases
ATGATAAGAAAAACTTTACCAGTTCTGATTGGCACTCTACTGTCATCGACGCTCGCTTTTGCTGACGTTTCCCTTGAAAC
CAAAGGGTTGGATGGCGCGCTTGCAAATAATGTGGATGCTTATCTGAGTGCAATTCCTGAAGAAGAGTATTCGGTTTCAT
TGAGGTTCCAATCTCGCTTGGAGTCGATGATCAAAGAAGCGTTGAATGCATTAGGCTACTACCAACCTAATATCACATTT
ACTCATTCTGAAGATGATACCGAATTGACTGTTACGGTTGAGCCGGGAGAGCCAGTTGTTATTTATGCTTCAGATATTGT
TCTGACTGGTGAAGCTAAAGATGATCCTGATTTTTTGGCCTTGATAGCTAAGAGCAAGTTGTCTAAAGGTTCGATTTTGA
ATCATGGTAATTATGATTCTTTAAAATCATCGATCCGCAACCTTGGATTAGCGAAAGGTTACTTCGATGGGGCGTATGAT
CTTAGCAAACTAGAAGTCGCTCCTGAATTAAACCGCGCTTATGTCCGCCTTCATTATAACAGTGGTATTCGTTATCACTT
TGGCTCTACTCAGGTTACTGGTAGCCAAATAGAAGAAGAGAAGGTGCAGTCACTTAAACCATTTGAAGATGGCGAACCTT
ACTCGATAACCAAAGTTGGCGAATACAACCAAAACCTTTCCAATACGGATTGGTTCTCTTCAGTCTTTGTTGAGCCTGAT
TTAAGTCAATTGGGTGAAGGTCGAGAAATTCCGATGAAGGTAAGCCTTGCTCCGCAAGCGCGGAACCAAATTGAAACGGG
TATCGGTGTATCAACAGACTTGGGTGTAAAAGGTACCCTTAAATGGAAGAAACCTTGGGTTAACGAGAAAGGTCATAGTT
TTAATAGTAGTTTATCGATCTCAAAGCCCGAGCAGACGATTACCGCGGCTTATAAAATCCCTTTGGATGACGTGCTTAAT
GACTACTATCAAATTAAGTACGGTATGAAGAACTTGGATAACCGAGATACCAAAAGTTTGGAGTCAAACTTAGCCTTAGA
AAGGTACTGGCGTCTAGACAATGGTTGGCAACGCACGGTATTCATTCGATACCTAGTCGAAAACTATAAACAAGGTTTAC
AAGACGATTTGGCGCAGTTTGTGTTGCCAGGTGTCTCTTTCTCACGCACTCGAACCCGAGGCGGTTCAATGCCGATGTGG
GGCGATAAACAAACCATCATGGTTGAAGCGGCTGATGATACCTTGTTATCTGAAACCCAAGTCGTACGATTTCAAGGGCA
AACCGCATGGATTCGAAGCATTGGTAATAACCACCGAGGTTTAACCCGCCTTCAATTCGGCGGAAACTTTGCGGACGAAT
TTGATAAGTTATCTCCTTCTTTAAGATTTTTTGCGGGTGGTGATAATAGCATCCGTGGTTATGGCTATGAGTCTATCTCT
CCTCGAGATGAAAGTGGCGCACTAACGGGGGCGAAATTCATTGCAACCAGTTCGTTTGAATACCAATATCGCTTAGTTGG
GAATTGGTGGGGAGCGGCTTTCTACGATATTGGTGATGCATTCAATGACACGCCAGAGTGGAAACATGGTACTGGTGTAG
GGATTCGCTGGGCGTCCCCCGTCGGTCCTGTGAGTTTAGATTTTGCTTGGGGTCTAGATGCGAAAAAAGGTGATGAGTTC
CAACTGCACTTTAGTTTAGGGCCAGAATTATGA

Upstream 100 bases:

>100_bases
GACCGTGTTATTGCCGGATTTATTGCAGACTCAATGTCGTTTTAGCGGTATGATTTCTTTTCACTTATTAACGTATTGAT
AACTTCTTCACCAATTAAAC

Downstream 100 bases:

>100_bases
TCAAAGTGGTGGGTAAGTGTATAAAGTGGGCGTCGATTTCATTGACGTCGATTTTGCTATTGTTAATCGCCCTACTAGGT
TTTGTTTTGTTCACCAATTC

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 570; Mature: 570

Protein sequence:

>570_residues
MIRKTLPVLIGTLLSSTLAFADVSLETKGLDGALANNVDAYLSAIPEEEYSVSLRFQSRLESMIKEALNALGYYQPNITF
THSEDDTELTVTVEPGEPVVIYASDIVLTGEAKDDPDFLALIAKSKLSKGSILNHGNYDSLKSSIRNLGLAKGYFDGAYD
LSKLEVAPELNRAYVRLHYNSGIRYHFGSTQVTGSQIEEEKVQSLKPFEDGEPYSITKVGEYNQNLSNTDWFSSVFVEPD
LSQLGEGREIPMKVSLAPQARNQIETGIGVSTDLGVKGTLKWKKPWVNEKGHSFNSSLSISKPEQTITAAYKIPLDDVLN
DYYQIKYGMKNLDNRDTKSLESNLALERYWRLDNGWQRTVFIRYLVENYKQGLQDDLAQFVLPGVSFSRTRTRGGSMPMW
GDKQTIMVEAADDTLLSETQVVRFQGQTAWIRSIGNNHRGLTRLQFGGNFADEFDKLSPSLRFFAGGDNSIRGYGYESIS
PRDESGALTGAKFIATSSFEYQYRLVGNWWGAAFYDIGDAFNDTPEWKHGTGVGIRWASPVGPVSLDFAWGLDAKKGDEF
QLHFSLGPEL

Sequences:

>Translated_570_residues
MIRKTLPVLIGTLLSSTLAFADVSLETKGLDGALANNVDAYLSAIPEEEYSVSLRFQSRLESMIKEALNALGYYQPNITF
THSEDDTELTVTVEPGEPVVIYASDIVLTGEAKDDPDFLALIAKSKLSKGSILNHGNYDSLKSSIRNLGLAKGYFDGAYD
LSKLEVAPELNRAYVRLHYNSGIRYHFGSTQVTGSQIEEEKVQSLKPFEDGEPYSITKVGEYNQNLSNTDWFSSVFVEPD
LSQLGEGREIPMKVSLAPQARNQIETGIGVSTDLGVKGTLKWKKPWVNEKGHSFNSSLSISKPEQTITAAYKIPLDDVLN
DYYQIKYGMKNLDNRDTKSLESNLALERYWRLDNGWQRTVFIRYLVENYKQGLQDDLAQFVLPGVSFSRTRTRGGSMPMW
GDKQTIMVEAADDTLLSETQVVRFQGQTAWIRSIGNNHRGLTRLQFGGNFADEFDKLSPSLRFFAGGDNSIRGYGYESIS
PRDESGALTGAKFIATSSFEYQYRLVGNWWGAAFYDIGDAFNDTPEWKHGTGVGIRWASPVGPVSLDFAWGLDAKKGDEF
QLHFSLGPEL
>Mature_570_residues
MIRKTLPVLIGTLLSSTLAFADVSLETKGLDGALANNVDAYLSAIPEEEYSVSLRFQSRLESMIKEALNALGYYQPNITF
THSEDDTELTVTVEPGEPVVIYASDIVLTGEAKDDPDFLALIAKSKLSKGSILNHGNYDSLKSSIRNLGLAKGYFDGAYD
LSKLEVAPELNRAYVRLHYNSGIRYHFGSTQVTGSQIEEEKVQSLKPFEDGEPYSITKVGEYNQNLSNTDWFSSVFVEPD
LSQLGEGREIPMKVSLAPQARNQIETGIGVSTDLGVKGTLKWKKPWVNEKGHSFNSSLSISKPEQTITAAYKIPLDDVLN
DYYQIKYGMKNLDNRDTKSLESNLALERYWRLDNGWQRTVFIRYLVENYKQGLQDDLAQFVLPGVSFSRTRTRGGSMPMW
GDKQTIMVEAADDTLLSETQVVRFQGQTAWIRSIGNNHRGLTRLQFGGNFADEFDKLSPSLRFFAGGDNSIRGYGYESIS
PRDESGALTGAKFIATSSFEYQYRLVGNWWGAAFYDIGDAFNDTPEWKHGTGVGIRWASPVGPVSLDFAWGLDAKKGDEF
QLHFSLGPEL

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=576, Percent_Identity=42.7083333333333, Blast_Score=468, Evalue=1e-133,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 63540; Mature: 63540

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRKTLPVLIGTLLSSTLAFADVSLETKGLDGALANNVDAYLSAIPEEEYSVSLRFQSRL
CCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHCCHHHHHHHCCCCCEEEEEEHHHHH
ESMIKEALNALGYYQPNITFTHSEDDTELTVTVEPGEPVVIYASDIVLTGEAKDDPDFLA
HHHHHHHHHHHCEECCCEEEEECCCCCEEEEEECCCCCEEEEECCEEEECCCCCCCHHHH
LIAKSKLSKGSILNHGNYDSLKSSIRNLGLAKGYFDGAYDLSKLEVAPELNRAYVRLHYN
HHHHHCCCCCCEECCCCHHHHHHHHHHCCCCCCCCCCCCCCHHEECCCCCCEEEEEEEEC
SGIRYHFGSTQVTGSQIEEEKVQSLKPFEDGEPYSITKVGEYNQNLSNTDWFSSVFVEPD
CCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCHHEEEECCC
LSQLGEGREIPMKVSLAPQARNQIETGIGVSTDLGVKGTLKWKKPWVNEKGHSFNSSLSI
HHHHCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEC
SKPEQTITAAYKIPLDDVLNDYYQIKYGMKNLDNRDTKSLESNLALERYWRLDNGWQRTV
CCCCCEEEEEEECCHHHHHHHHHEEHHCHHCCCCCHHHHHHHCCCHHHHCCCCCCCCHHH
FIRYLVENYKQGLQDDLAQFVLPGVSFSRTRTRGGSMPMWGDKQTIMVEAADDTLLSETQ
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCCCE
VVRFQGQTAWIRSIGNNHRGLTRLQFGGNFADEFDKLSPSLRFFAGGDNSIRGYGYESIS
EEEECCCHHHHHHCCCCCCCEEEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
PRDESGALTGAKFIATSSFEYQYRLVGNWWGAAFYDIGDAFNDTPEWKHGTGVGIRWASP
CCCCCCCCCCEEEEEECCCEEEEEEEECCCCCHHHHHCCCCCCCCCCCCCCCCEEEECCC
VGPVSLDFAWGLDAKKGDEFQLHFSLGPEL
CCCEEEEEEECCCCCCCCCEEEEEECCCCC
>Mature Secondary Structure
MIRKTLPVLIGTLLSSTLAFADVSLETKGLDGALANNVDAYLSAIPEEEYSVSLRFQSRL
CCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHCCHHHHHHHCCCCCEEEEEEHHHHH
ESMIKEALNALGYYQPNITFTHSEDDTELTVTVEPGEPVVIYASDIVLTGEAKDDPDFLA
HHHHHHHHHHHCEECCCEEEEECCCCCEEEEEECCCCCEEEEECCEEEECCCCCCCHHHH
LIAKSKLSKGSILNHGNYDSLKSSIRNLGLAKGYFDGAYDLSKLEVAPELNRAYVRLHYN
HHHHHCCCCCCEECCCCHHHHHHHHHHCCCCCCCCCCCCCCHHEECCCCCCEEEEEEEEC
SGIRYHFGSTQVTGSQIEEEKVQSLKPFEDGEPYSITKVGEYNQNLSNTDWFSSVFVEPD
CCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCHHEEEECCC
LSQLGEGREIPMKVSLAPQARNQIETGIGVSTDLGVKGTLKWKKPWVNEKGHSFNSSLSI
HHHHCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEC
SKPEQTITAAYKIPLDDVLNDYYQIKYGMKNLDNRDTKSLESNLALERYWRLDNGWQRTV
CCCCCEEEEEEECCHHHHHHHHHEEHHCHHCCCCCHHHHHHHCCCHHHHCCCCCCCCHHH
FIRYLVENYKQGLQDDLAQFVLPGVSFSRTRTRGGSMPMWGDKQTIMVEAADDTLLSETQ
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCCCE
VVRFQGQTAWIRSIGNNHRGLTRLQFGGNFADEFDKLSPSLRFFAGGDNSIRGYGYESIS
EEEECCCHHHHHHCCCCCCCEEEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
PRDESGALTGAKFIATSSFEYQYRLVGNWWGAAFYDIGDAFNDTPEWKHGTGVGIRWASP
CCCCCCCCCCEEEEEECCCEEEEEEEECCCCCHHHHHCCCCCCCCCCCCCCCCEEEECCC
VGPVSLDFAWGLDAKKGDEFQLHFSLGPEL
CCCEEEEEEECCCCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]