| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is yjgA [C]
Identifier: 218710684
GI number: 218710684
Start: 2927504
End: 2928028
Strand: Direct
Name: yjgA [C]
Synonym: VS_2764
Alternate gene names: 218710684
Gene position: 2927504-2928028 (Clockwise)
Preceding gene: 218710682
Following gene: 218710690
Centisome position: 88.73
GC content: 44.57
Gene sequence:
>525_bases ATGGCTCGCAAAAACCAAAAAGCCCCATGGGAACCAGAAGAAGAAATCATCTGGGTAAGTAAGACAGAAATGAAAACGGA CATGGACGCCCTGCAAAAGCTGGGAGAAGAGCTTGTTGACCTAAAGCCTTCTGTATTAGACAAATTTCCGCTGTCTGAAG ATTTGGCACAAGCGATTAAAGATGCACAACGCTTTAAAAATGAAGCGAAGCGCCGTCAACTTCAATACATTGGTAAAGTA ATGCGCAGTGTCGATCCAGAGCCAATTCAAGCGGCTTTAGATAAGATTCGCAACAAACACTCTCAAGCAACAGTTGAACT GCACAAACTAGAACAACTGCGTGATCGTGTTGTTGCAGAAGGCGATGCGGCCATTTCAGACGTTATGGAAATGTACCCGG AAGCTGACCGTCAACGTCTTCGTCAGCTCGCTCGTCAAGCTAACAAAGAGAAAGCGGCAAATAAACCGGCTAAGTCTTCT CGTGAAATATTCCAAATCTTAAAAGAGCTAAAGCTAGGCGACTAA
Upstream 100 bases:
>100_bases GGTCAATATTACGTAGGATAACAAGAATTTCGCTTTCTCCCCAAGATTCTTGCTAAAATAGGCAATATATTCGTTTGAGA TAGTGACATAGGCAGAAAAG
Downstream 100 bases:
>100_bases TCTTCGCCGCCCTTTAATCAGAAAGATAATAAAAGACCTAGCGCATGCTAGGTCTTTTTGTTTTTGACGCACTCGATATC AAGAAGCTCTCAATATCAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 174; Mature: 173
Protein sequence:
>174_residues MARKNQKAPWEPEEEIIWVSKTEMKTDMDALQKLGEELVDLKPSVLDKFPLSEDLAQAIKDAQRFKNEAKRRQLQYIGKV MRSVDPEPIQAALDKIRNKHSQATVELHKLEQLRDRVVAEGDAAISDVMEMYPEADRQRLRQLARQANKEKAANKPAKSS REIFQILKELKLGD
Sequences:
>Translated_174_residues MARKNQKAPWEPEEEIIWVSKTEMKTDMDALQKLGEELVDLKPSVLDKFPLSEDLAQAIKDAQRFKNEAKRRQLQYIGKV MRSVDPEPIQAALDKIRNKHSQATVELHKLEQLRDRVVAEGDAAISDVMEMYPEADRQRLRQLARQANKEKAANKPAKSS REIFQILKELKLGD >Mature_173_residues ARKNQKAPWEPEEEIIWVSKTEMKTDMDALQKLGEELVDLKPSVLDKFPLSEDLAQAIKDAQRFKNEAKRRQLQYIGKVM RSVDPEPIQAALDKIRNKHSQATVELHKLEQLRDRVVAEGDAAISDVMEMYPEADRQRLRQLARQANKEKAANKPAKSSR EIFQILKELKLGD
Specific function: Unknown
COG id: COG3028
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0307 family
Homologues:
Organism=Escherichia coli, GI1790681, Length=153, Percent_Identity=56.8627450980392, Blast_Score=176, Evalue=1e-45,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y2764_VIBSL (B7VKW1)
Other databases:
- EMBL: FM954972 - RefSeq: YP_002418305.1 - ProteinModelPortal: B7VKW1 - SMR: B7VKW1 - GeneID: 7162253 - GenomeReviews: FM954972_GR - KEGG: vsp:VS_2764 - HOGENOM: HBG677712 - OMA: KAPWEEE - ProtClustDB: PRK05255 - HAMAP: MF_00765 - InterPro: IPR023153 - InterPro: IPR006839 - PIRSF: PIRSF016183
Pfam domain/function: PF04751 DUF615
EC number: NA
Molecular weight: Translated: 20060; Mature: 19929
Theoretical pI: Translated: 9.41; Mature: 9.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARKNQKAPWEPEEEIIWVSKTEMKTDMDALQKLGEELVDLKPSVLDKFPLSEDLAQAIK CCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHH DAQRFKNEAKRRQLQYIGKVMRSVDPEPIQAALDKIRNKHSQATVELHKLEQLRDRVVAE HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GDAAISDVMEMYPEADRQRLRQLARQANKEKAANKPAKSSREIFQILKELKLGD CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure ARKNQKAPWEPEEEIIWVSKTEMKTDMDALQKLGEELVDLKPSVLDKFPLSEDLAQAIK CCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHH DAQRFKNEAKRRQLQYIGKVMRSVDPEPIQAALDKIRNKHSQATVELHKLEQLRDRVVAE HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GDAAISDVMEMYPEADRQRLRQLARQANKEKAANKPAKSSREIFQILKELKLGD CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA