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The map label for this gene is yggS [C]

Identifier: 218710629

GI number: 218710629

Start: 2871406

End: 2872122

Strand: Direct

Name: yggS [C]

Synonym: VS_2683

Alternate gene names: 218710629

Gene position: 2871406-2872122 (Clockwise)

Preceding gene: 218710626

Following gene: 218710630

Centisome position: 87.03

GC content: 43.93

Gene sequence:

>717_bases
ATGAGTAGTATTCAACAAAATATCGAACAAATCACCTCACAGATTCGTAGTGCTGAACAAAAGTGCGGACGAGCTCCAGA
CTCCGTGCAACTTTTAGCCGTCAGTAAAACTAAACCTATTGATGCGATTCTAGAAGCCGCACTCGGAGGTCAAGTTGCCT
TTGGTGAAAACTATGTTCAAGAAGGTGTCGATAAAGTAAAACACTTTTCAGAACAACATTCTAACCTAAATTTAGAATGG
CATTTTATTGGCCCAATCCAATCTAATAAAACTCGCCCTATTGCGGAAAGCTTCCAATGGGTGCATTCCGTTGATCGCGA
TAAGATCGCACAAAGGCTTCATGATCAGCGACCAAACGAGCTTCCACCTCTACAAGTGCTCATTCAAGTGAACACCAGTG
GTGAAGATTCAAAATCAGGAACGTCAGAAGAAACAGTTTTTGCGCTCGCAGAGTTGATTTCGTCGCTCCCTAACCTCACT
TTAAGAGGGTTGATGTCGATTCCCGCAAACGTATCTGACTATCAATCTCAGCTTAAGGCATTTTCTCAACTGGCAGAGCT
TCAACAAAAGCTCGCAGCGAAGTATCCAGACATCGATACCCTTTCAATGGGTATGAGTGGTGATATGGATGCAGCCGTTG
AGGCTGGTAGCACAATGGTTCGTATTGGAACGGCCATCTTTGGTGCTCGTGATTACGCGAATAACCGTAGTAAGTAA

Upstream 100 bases:

>100_bases
GATACACCCGCGGAAAGATGTAGATCTGACGCGTTATGCTTTACACTAAAATCTAGTAACTCAGTGATATCCATTTATTT
TCCCTTAAGTAAAGTCAGCT

Downstream 100 bases:

>100_bases
CCAAGTACAAGTATTGATACCGCTTCGCTTGAACCGCGCAGCGACACGCTCAGGATTTTATATATGGAACATAAGAACAT
CGCCTTTATTGGGGCGGGAA

Product: hypothetical protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MSSIQQNIEQITSQIRSAEQKCGRAPDSVQLLAVSKTKPIDAILEAALGGQVAFGENYVQEGVDKVKHFSEQHSNLNLEW
HFIGPIQSNKTRPIAESFQWVHSVDRDKIAQRLHDQRPNELPPLQVLIQVNTSGEDSKSGTSEETVFALAELISSLPNLT
LRGLMSIPANVSDYQSQLKAFSQLAELQQKLAAKYPDIDTLSMGMSGDMDAAVEAGSTMVRIGTAIFGARDYANNRSK

Sequences:

>Translated_238_residues
MSSIQQNIEQITSQIRSAEQKCGRAPDSVQLLAVSKTKPIDAILEAALGGQVAFGENYVQEGVDKVKHFSEQHSNLNLEW
HFIGPIQSNKTRPIAESFQWVHSVDRDKIAQRLHDQRPNELPPLQVLIQVNTSGEDSKSGTSEETVFALAELISSLPNLT
LRGLMSIPANVSDYQSQLKAFSQLAELQQKLAAKYPDIDTLSMGMSGDMDAAVEAGSTMVRIGTAIFGARDYANNRSK
>Mature_237_residues
SSIQQNIEQITSQIRSAEQKCGRAPDSVQLLAVSKTKPIDAILEAALGGQVAFGENYVQEGVDKVKHFSEQHSNLNLEWH
FIGPIQSNKTRPIAESFQWVHSVDRDKIAQRLHDQRPNELPPLQVLIQVNTSGEDSKSGTSEETVFALAELISSLPNLTL
RGLMSIPANVSDYQSQLKAFSQLAELQQKLAAKYPDIDTLSMGMSGDMDAAVEAGSTMVRIGTAIFGARDYANNRSK

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=214, Percent_Identity=41.588785046729, Blast_Score=134, Evalue=1e-31,
Organism=Escherichia coli, GI1789321, Length=233, Percent_Identity=57.9399141630901, Blast_Score=278, Evalue=2e-76,
Organism=Caenorhabditis elegans, GI17533025, Length=222, Percent_Identity=39.1891891891892, Blast_Score=123, Evalue=6e-29,
Organism=Saccharomyces cerevisiae, GI6319435, Length=212, Percent_Identity=38.6792452830189, Blast_Score=121, Evalue=9e-29,
Organism=Drosophila melanogaster, GI45550861, Length=211, Percent_Identity=43.6018957345972, Blast_Score=152, Evalue=2e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26097; Mature: 25965

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSIQQNIEQITSQIRSAEQKCGRAPDSVQLLAVSKTKPIDAILEAALGGQVAFGENYVQ
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHH
EGVDKVKHFSEQHSNLNLEWHFIGPIQSNKTRPIAESFQWVHSVDRDKIAQRLHDQRPNE
HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCC
LPPLQVLIQVNTSGEDSKSGTSEETVFALAELISSLPNLTLRGLMSIPANVSDYQSQLKA
CCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHH
FSQLAELQQKLAAKYPDIDTLSMGMSGDMDAAVEAGSTMVRIGTAIFGARDYANNRSK
HHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SSIQQNIEQITSQIRSAEQKCGRAPDSVQLLAVSKTKPIDAILEAALGGQVAFGENYVQ
CHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHH
EGVDKVKHFSEQHSNLNLEWHFIGPIQSNKTRPIAESFQWVHSVDRDKIAQRLHDQRPNE
HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCC
LPPLQVLIQVNTSGEDSKSGTSEETVFALAELISSLPNLTLRGLMSIPANVSDYQSQLKA
CCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHH
FSQLAELQQKLAAKYPDIDTLSMGMSGDMDAAVEAGSTMVRIGTAIFGARDYANNRSK
HHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8982386 [H]