| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is cgt [H]
Identifier: 218710536
GI number: 218710536
Start: 2769345
End: 2771234
Strand: Reverse
Name: cgt [H]
Synonym: VS_2585
Alternate gene names: 218710536
Gene position: 2771234-2769345 (Counterclockwise)
Preceding gene: 218710537
Following gene: 218710535
Centisome position: 83.99
GC content: 43.23
Gene sequence:
>1890_bases GTGAATGAAGGACGACACATGAAGAATAAGCTTATTGTGCTATCAGCATTACTGGCTTCCCTACCTGCTATGGCAGATTG GAACCAGGCCTATTTCCGTGGTACAGCCAATAACTGGCAAGCCGAATCTATGGTTAAAGTGAAAGCAAACCACTGGCAAA TAGTGAAAAAATTCAATACCGGTGATGGAACGAACTCTCCTAGTTTTAAGGTTGATCGCTTTGGTGATTGGTCTGAAAAC TACCCTCTATCAAATTTCTCAGTTGACCCTAATAAAACCTACGAAATTAATTTCTATGACGACACGAATAAAGTGGTGGT CCATGAAAAACTTCCCTTTGATATGCGTGATGAAACCATGTATTTCGTGTTTCTTGACCGTTTCTATGATGGCGATTCAG CCAATAATACAGCGACGGGTGCCGACATGTATTCGGCAGACAAATCGGATTTCAAAAAATACTTTGGTGGTGACTTAAAA GGTTTAACTGCAAAGCTAGATTACTTGCATGATATGGGGATCACGGCCATTTGGATAACGCCTCCAGCAGATAACATTAA CGTGCCTGACAGTCGAGGCGGTGCGGGTTACCACGGCTACTGGGGACGTGACTTCTTTAAAGTTGACGAGCATCTAGGTA CCGTTGCAGATTTTAAAGCATTAAAGACGAAAATGGATAGCTACGGCATGAAACTCGTGCTGGACTATGCGCCTAATCAC TCTAACCCTGATGATGAAGGGGAATACGGTGCACTTTATAAAAAGGGTGTTCGAGTTACCGACTACAAAAATGATAATGC AGGGTATTACCATCATAATGGAGCGATCGCTGAAAACGGTAAAGATTGGGAATGGAACGACGCATGGGCGGTTCGTAATA AAACCTTGTTTAACTTAACCGATTTTGACCAACGTAAAGATGGCCCTGCGCGTCAGTACTTGATTGATGGCGCGAAATTC TGGGTAGACTTAGGGGTGGATGCGATTCGTATTGATGCGGTGAAACATATGGATAAAGAGTTTATCCAAGATTTTACTGG CCAAATAAACGCGTACGCGAAGAAAAGCCAAGGTAAAGATTTCTATTTCTTTGGTGAGTGGATGGATTCAGGTGCTGACG CAACGGGATCAAACTTTGCATCTATCGATTTTGCCAATACATCAGGCTCTGCATTGCTTGATTTTGGTTTGAGAAACACC ATCGAAAACGCCTTGCTACAACACAATGGAACTGGCATGTATGCCATTAATAACTACATGAAGCTGAGAGACCAAAAATT CACAAGCAGTGATTGGCAAGTGGTGTTCTTAGATAACCACGATGCGTCACGTATCTCTACCGTTTTACGCTCAGACGCGA AGAACTTTGGCGCAGGCAAAGACAAGTGGGGTGGTCGTCAAAGTGTTGCATTTGCACAAGACAGAGTGGAGCTGGGTTTA GCGCTTATTATGACCTCTCGTGGCATTCCATGTATTTACTATGGAACAGAGCACTACGCGGCTAACTTCACTACCAACGG TTTTGGCCAACAAGGTAATGACCCATACAACCGTGAAATGATGCCAAGCTTTGATAAAACGACCAATGCTTACAAGATGA TAAAAACATTAAGTAAGCTTCGTAAGGACAGCTATGCGGTTCAGCAAGGTGATTATATCGAGCGTTGGATAAGCAATGAT GTATTGGTATATGAACGTAACGCAGGCGATGACGTAGTTGTGGTTGCAATGAACCTCGGTCAAGGTACATCGGTTAACGC GGTGAATTTAGGATTGGCAAACGGAACTTACGACAGTGTACTAGGAACTGACCAAGTGGTTGTTTCTAATGGCAGTGGCA CATTTAATCTAGACCAAAATGAAGTGGTTATCTTACGCACTAAGCACTAA
Upstream 100 bases:
>100_bases GGTTGTATGGGAGGGAGACTATATAGCATGCTCACGAAACACGACCTGATAGTTAAATCGCGTGACAAGAATATAAAACA ATAACCTACACCAACATAAC
Downstream 100 bases:
>100_bases CAGATAATACAGGCTATTGATAACGGTTTTACTGGTTTTCGATTGAGTCTCAACAACATAAACCTCGCACATAGTGTGCG AGGTTTTTTTTGTTTTTCTT
Product: cyclomaltodextrin glucanotransferase precursor
Products: NA
Alternate protein names: Cyclodextrin-glycosyltransferase; CGTase [H]
Number of amino acids: Translated: 629; Mature: 629
Protein sequence:
>629_residues MNEGRHMKNKLIVLSALLASLPAMADWNQAYFRGTANNWQAESMVKVKANHWQIVKKFNTGDGTNSPSFKVDRFGDWSEN YPLSNFSVDPNKTYEINFYDDTNKVVVHEKLPFDMRDETMYFVFLDRFYDGDSANNTATGADMYSADKSDFKKYFGGDLK GLTAKLDYLHDMGITAIWITPPADNINVPDSRGGAGYHGYWGRDFFKVDEHLGTVADFKALKTKMDSYGMKLVLDYAPNH SNPDDEGEYGALYKKGVRVTDYKNDNAGYYHHNGAIAENGKDWEWNDAWAVRNKTLFNLTDFDQRKDGPARQYLIDGAKF WVDLGVDAIRIDAVKHMDKEFIQDFTGQINAYAKKSQGKDFYFFGEWMDSGADATGSNFASIDFANTSGSALLDFGLRNT IENALLQHNGTGMYAINNYMKLRDQKFTSSDWQVVFLDNHDASRISTVLRSDAKNFGAGKDKWGGRQSVAFAQDRVELGL ALIMTSRGIPCIYYGTEHYAANFTTNGFGQQGNDPYNREMMPSFDKTTNAYKMIKTLSKLRKDSYAVQQGDYIERWISND VLVYERNAGDDVVVVAMNLGQGTSVNAVNLGLANGTYDSVLGTDQVVVSNGSGTFNLDQNEVVILRTKH
Sequences:
>Translated_629_residues MNEGRHMKNKLIVLSALLASLPAMADWNQAYFRGTANNWQAESMVKVKANHWQIVKKFNTGDGTNSPSFKVDRFGDWSEN YPLSNFSVDPNKTYEINFYDDTNKVVVHEKLPFDMRDETMYFVFLDRFYDGDSANNTATGADMYSADKSDFKKYFGGDLK GLTAKLDYLHDMGITAIWITPPADNINVPDSRGGAGYHGYWGRDFFKVDEHLGTVADFKALKTKMDSYGMKLVLDYAPNH SNPDDEGEYGALYKKGVRVTDYKNDNAGYYHHNGAIAENGKDWEWNDAWAVRNKTLFNLTDFDQRKDGPARQYLIDGAKF WVDLGVDAIRIDAVKHMDKEFIQDFTGQINAYAKKSQGKDFYFFGEWMDSGADATGSNFASIDFANTSGSALLDFGLRNT IENALLQHNGTGMYAINNYMKLRDQKFTSSDWQVVFLDNHDASRISTVLRSDAKNFGAGKDKWGGRQSVAFAQDRVELGL ALIMTSRGIPCIYYGTEHYAANFTTNGFGQQGNDPYNREMMPSFDKTTNAYKMIKTLSKLRKDSYAVQQGDYIERWISND VLVYERNAGDDVVVVAMNLGQGTSVNAVNLGLANGTYDSVLGTDQVVVSNGSGTFNLDQNEVVILRTKH >Mature_629_residues MNEGRHMKNKLIVLSALLASLPAMADWNQAYFRGTANNWQAESMVKVKANHWQIVKKFNTGDGTNSPSFKVDRFGDWSEN YPLSNFSVDPNKTYEINFYDDTNKVVVHEKLPFDMRDETMYFVFLDRFYDGDSANNTATGADMYSADKSDFKKYFGGDLK GLTAKLDYLHDMGITAIWITPPADNINVPDSRGGAGYHGYWGRDFFKVDEHLGTVADFKALKTKMDSYGMKLVLDYAPNH SNPDDEGEYGALYKKGVRVTDYKNDNAGYYHHNGAIAENGKDWEWNDAWAVRNKTLFNLTDFDQRKDGPARQYLIDGAKF WVDLGVDAIRIDAVKHMDKEFIQDFTGQINAYAKKSQGKDFYFFGEWMDSGADATGSNFASIDFANTSGSALLDFGLRNT IENALLQHNGTGMYAINNYMKLRDQKFTSSDWQVVFLDNHDASRISTVLRSDAKNFGAGKDKWGGRQSVAFAQDRVELGL ALIMTSRGIPCIYYGTEHYAANFTTNGFGQQGNDPYNREMMPSFDKTTNAYKMIKTLSKLRKDSYAVQQGDYIERWISND VLVYERNAGDDVVVVAMNLGQGTSVNAVNLGLANGTYDSVLGTDQVVVSNGSGTFNLDQNEVVILRTKH
Specific function: Since Only Maltooligosaccharides Up To A Chain Length Of 6 Glucose Units Are Actively Transported Through The Cytoplasmic Membrane VIa The Membrane-Bound Complex Of Three Proteins, Malf, Malg, And Malk, Longer Maltooligosaccharides Must First Be Degraded
COG id: COG0366
COG function: function code G; Glycosidases
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 CBM20 (carbohydrate binding type-20) domain [H]
Homologues:
Organism=Homo sapiens, GI187423904, Length=511, Percent_Identity=25.0489236790607, Blast_Score=73, Evalue=1e-12, Organism=Escherichia coli, GI1789995, Length=537, Percent_Identity=24.2085661080074, Blast_Score=96, Evalue=7e-21, Organism=Escherichia coli, GI1790687, Length=196, Percent_Identity=29.5918367346939, Blast_Score=74, Evalue=3e-14, Organism=Drosophila melanogaster, GI24586587, Length=195, Percent_Identity=32.8205128205128, Blast_Score=91, Evalue=3e-18, Organism=Drosophila melanogaster, GI24586591, Length=580, Percent_Identity=22.2413793103448, Blast_Score=85, Evalue=1e-16, Organism=Drosophila melanogaster, GI24586597, Length=197, Percent_Identity=30.4568527918782, Blast_Score=81, Evalue=3e-15, Organism=Drosophila melanogaster, GI24583747, Length=196, Percent_Identity=32.1428571428571, Blast_Score=80, Evalue=3e-15, Organism=Drosophila melanogaster, GI24583749, Length=196, Percent_Identity=32.1428571428571, Blast_Score=80, Evalue=4e-15, Organism=Drosophila melanogaster, GI24586599, Length=213, Percent_Identity=30.0469483568075, Blast_Score=78, Evalue=2e-14, Organism=Drosophila melanogaster, GI221330053, Length=188, Percent_Identity=31.9148936170213, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI45549022, Length=197, Percent_Identity=29.9492385786802, Blast_Score=76, Evalue=7e-14, Organism=Drosophila melanogaster, GI24583745, Length=196, Percent_Identity=28.0612244897959, Blast_Score=74, Evalue=3e-13, Organism=Drosophila melanogaster, GI24586593, Length=200, Percent_Identity=27, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI24586589, Length=195, Percent_Identity=27.6923076923077, Blast_Score=70, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006048 - InterPro: IPR013784 - InterPro: IPR013780 - InterPro: IPR006047 - InterPro: IPR006589 - InterPro: IPR002044 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR013783 [H]
Pfam domain/function: PF00128 Alpha-amylase; PF00686 CBM_20 [H]
EC number: =2.4.1.19 [H]
Molecular weight: Translated: 70713; Mature: 70713
Theoretical pI: Translated: 5.50; Mature: 5.50
Prosite motif: PS00157 RUBISCO_LARGE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNEGRHMKNKLIVLSALLASLPAMADWNQAYFRGTANNWQAESMVKVKANHWQIVKKFNT CCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCCCCCCEEEEECCCEEEEEEECC GDGTNSPSFKVDRFGDWSENYPLSNFSVDPNKTYEINFYDDTNKVVVHEKLPFDMRDETM CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCEE YFVFLDRFYDGDSANNTATGADMYSADKSDFKKYFGGDLKGLTAKLDYLHDMGITAIWIT EEEEEEECCCCCCCCCCCCCCHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEE PPADNINVPDSRGGAGYHGYWGRDFFKVDEHLGTVADFKALKTKMDSYGMKLVLDYAPNH CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCEEEEEEECCCC SNPDDEGEYGALYKKGVRVTDYKNDNAGYYHHNGAIAENGKDWEWNDAWAVRNKTLFNLT CCCCCCCCCCHHHHCCEEEEEECCCCCCEEECCCEECCCCCCCCCCCCEEECCCEEEEEC DFDQRKDGPARQYLIDGAKFWVDLGVDAIRIDAVKHMDKEFIQDFTGQINAYAKKSQGKD CCHHCCCCCHHHHEECCCEEEEECCCCEEEEHHHHHHHHHHHHHHCCCCEEEEHHCCCCE FYFFGEWMDSGADATGSNFASIDFANTSGSALLDFGLRNTIENALLQHNGTGMYAINNYM EEEEEEECCCCCCCCCCCEEEEEECCCCCCEEEEHHHHHHHHHHHHHCCCCEEEEECCCH KLRDQKFTSSDWQVVFLDNHDASRISTVLRSDAKNFGAGKDKWGGRQSVAFAQDRVELGL HHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCE ALIMTSRGIPCIYYGTEHYAANFTTNGFGQQGNDPYNREMMPSFDKTTNAYKMIKTLSKL EEEEECCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH RKDSYAVQQGDYIERWISNDVLVYERNAGDDVVVVAMNLGQGTSVNAVNLGLANGTYDSV HHHHHHHCCCHHHHHHHCCCEEEEECCCCCCEEEEEEECCCCCCCEEEEEEECCCCHHHH LGTDQVVVSNGSGTFNLDQNEVVILRTKH CCCCEEEEECCCCEEEECCCCEEEEEECC >Mature Secondary Structure MNEGRHMKNKLIVLSALLASLPAMADWNQAYFRGTANNWQAESMVKVKANHWQIVKKFNT CCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCCCCCCEEEEECCCEEEEEEECC GDGTNSPSFKVDRFGDWSENYPLSNFSVDPNKTYEINFYDDTNKVVVHEKLPFDMRDETM CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCEE YFVFLDRFYDGDSANNTATGADMYSADKSDFKKYFGGDLKGLTAKLDYLHDMGITAIWIT EEEEEEECCCCCCCCCCCCCCHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEE PPADNINVPDSRGGAGYHGYWGRDFFKVDEHLGTVADFKALKTKMDSYGMKLVLDYAPNH CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCEEEEEEECCCC SNPDDEGEYGALYKKGVRVTDYKNDNAGYYHHNGAIAENGKDWEWNDAWAVRNKTLFNLT CCCCCCCCCCHHHHCCEEEEEECCCCCCEEECCCEECCCCCCCCCCCCEEECCCEEEEEC DFDQRKDGPARQYLIDGAKFWVDLGVDAIRIDAVKHMDKEFIQDFTGQINAYAKKSQGKD CCHHCCCCCHHHHEECCCEEEEECCCCEEEEHHHHHHHHHHHHHHCCCCEEEEHHCCCCE FYFFGEWMDSGADATGSNFASIDFANTSGSALLDFGLRNTIENALLQHNGTGMYAINNYM EEEEEEECCCCCCCCCCCEEEEEECCCCCCEEEEHHHHHHHHHHHHHCCCCEEEEECCCH KLRDQKFTSSDWQVVFLDNHDASRISTVLRSDAKNFGAGKDKWGGRQSVAFAQDRVELGL HHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCE ALIMTSRGIPCIYYGTEHYAANFTTNGFGQQGNDPYNREMMPSFDKTTNAYKMIKTLSKL EEEEECCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH RKDSYAVQQGDYIERWISNDVLVYERNAGDDVVVVAMNLGQGTSVNAVNLGLANGTYDSV HHHHHHHCCCHHHHHHHCCCEEEEECCCCCCEEEEEEECCCCCCCEEEEEEECCCCHHHH LGTDQVVVSNGSGTFNLDQNEVVILRTKH CCCCEEEEECCCCEEEECCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2951300 [H]