| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is oadA [H]
Identifier: 218710530
GI number: 218710530
Start: 2760460
End: 2762250
Strand: Reverse
Name: oadA [H]
Synonym: VS_2569
Alternate gene names: 218710530
Gene position: 2762250-2760460 (Counterclockwise)
Preceding gene: 218710531
Following gene: 218710529
Centisome position: 83.72
GC content: 48.07
Gene sequence:
>1791_bases ATGAGCATGTCTAAACCACTAGCTATCACAGATGTGGTACTTCGTGACGCGCACCAGTCACTATTTGCTACTCGTATGCG TATCGAAGATATGCTGCCAATTGCGGCAGAACTGGATAAAGTCGGTTACTGGTCACTTGAGACTTGGGGCGGCGCAACGT TTGATTCGTGCATCCGTTTTCTTGGAGAAGATCCGTGGGAACGTTTACGAGAGCTGAAAAAAGCGATGCCCAACACACCA ATGCAGATGCTACTGCGTGGTCAAAATTTATTGGGTTACCGTCACTACGCGGATGATGTAGTAGAAAAGTTTGTTGAACG TGCCCATAGTAACGGCATGGACGTATTCCGTATTTTTGATGCGATGAATGACGTACGTAACTTTGAAACCGCAGTGAAAG CAACGATTGATGTTGGCGGCCACGCTCAAGGTACGTTGTCTTACACAACCAGTCCGGTTCACAACTCAGATACGTGGGTT GATTTGGCTAAGCGCCTAGAGGATCTAGGTTGTCATTCACTATGCATCAAAGACATGTCAGGTTTATTAAAGCCTTATGA AGCGGAAGAGCTAATCACTCGCATCAAAGCGTCTTGTGATGTGCCTCTAGCGCTGCATAGCCACGCGACAACGGGTCTAT CAACCGCTACAGCCGTTAAAGCTGTTGAAGCGGGTATTGATATTCTAGACACCGCAATCTCTTCTATGAGCTGTACTTAC GGCCATACACCAACCGAAACGGTTGTTGCTATGCTAGAAGGCACAGAGCGCGACACGAATCTCAAACTAGACCAAATCGA ACCAATCGCGGCTTACTTCCGTGATGTACGTAAAAAGTATGCGAAATGGGAAGGCCAGCTAAAAGGTGTCGATTCTCGAA TCTTGATCGCTCAAGTTCCTGGCGGCATGTTAACCAACATGGAAGGCCAGCTTAAAGAGCAAGGCGCTGCCGATCGCATG GATGAAGTTCTAGAAGAGATCCCACGCGTACGTAAAGAGTTGGGTTACATTCCTTTGGTAACACCTACTTCTCAGATTGT CGGTACTCAAGCGGTTATCAACGTTCTAACGGGTGAGCGCTACAAGAGCATCACTAAAGAGACTGCGGGTCTACTGAAAG GCGAATACGGTCAAGCTCCTGCTGAGGTTGATGCTGAACTGCAAGCGAAAGTGTTAGATGGCGCTGAGCCAATCACGTGT CGTCCTGCTGATTTACTTAAGTCTGAAATGGATACGTTAACGACTGACCTTTTAGAAAAAGCGAAATCAGATGGTATTTC ACTCGCTGAAGATACCGTTGATGATGTACTGACGTACGCACTATTCCCACAAGTGGGTCTTAAGTTCCTTAAAAACCGTC ACAACCCTGAAGCGTTTGAACCTGTACCAACGGCTGAAGCTGCAACTCCTGTTGCGGCTGCACCACAACCTGCTGCTGGC GGCATTGAGAGCTACAGCGTGAAGGTTGATGGTCAAGTTTATGATGTTGAAGTTGGCCCACAAGGTGAACTGACATCGGT ATCTCCATCAGCGAAACCAGCACAAGCGGCTCAAGCAGCACCTGCTGCGGCTTCTGATGCAGAAGCAGTTCCTGCTCCAT TAGCCGGCAACATCTTTAAAGTCATCGTTCAGGCGGGGGCAGAGGTTGCCGAAGGTGATGTTCTGCTGATCCTAGAAGCG ATGAAAATGGAAACGGAAGTACGAGCTGCTCGCAGTGGTATCGTTCAAGAATTGAATGTTAAAGAAGGCGATGCAGTTAC TGTAGGCGCTCCACTACTAAGCTTAGCGTAA
Upstream 100 bases:
>100_bases TCAGCTGTTAGTCCACAGGTAGTGGCAGCAATTTCGGCCGCGGTTCATCAATACCGTGCGTCTACTGCTAAGTAGCATTT AAAGGATTAAAAAGGAGTTT
Downstream 100 bases:
>100_bases GGGAGTACCATGGAAGGATTGATGACCTTATGGTCTGAAACAGGGATTGCTAACTTTGAGTTCGGCCAGATCTGTATGAT GTTGGTTGGTTGCTCACTGT
Product: oxaloacetate decarboxylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 596; Mature: 595
Protein sequence:
>596_residues MSMSKPLAITDVVLRDAHQSLFATRMRIEDMLPIAAELDKVGYWSLETWGGATFDSCIRFLGEDPWERLRELKKAMPNTP MQMLLRGQNLLGYRHYADDVVEKFVERAHSNGMDVFRIFDAMNDVRNFETAVKATIDVGGHAQGTLSYTTSPVHNSDTWV DLAKRLEDLGCHSLCIKDMSGLLKPYEAEELITRIKASCDVPLALHSHATTGLSTATAVKAVEAGIDILDTAISSMSCTY GHTPTETVVAMLEGTERDTNLKLDQIEPIAAYFRDVRKKYAKWEGQLKGVDSRILIAQVPGGMLTNMEGQLKEQGAADRM DEVLEEIPRVRKELGYIPLVTPTSQIVGTQAVINVLTGERYKSITKETAGLLKGEYGQAPAEVDAELQAKVLDGAEPITC RPADLLKSEMDTLTTDLLEKAKSDGISLAEDTVDDVLTYALFPQVGLKFLKNRHNPEAFEPVPTAEAATPVAAAPQPAAG GIESYSVKVDGQVYDVEVGPQGELTSVSPSAKPAQAAQAAPAAASDAEAVPAPLAGNIFKVIVQAGAEVAEGDVLLILEA MKMETEVRAARSGIVQELNVKEGDAVTVGAPLLSLA
Sequences:
>Translated_596_residues MSMSKPLAITDVVLRDAHQSLFATRMRIEDMLPIAAELDKVGYWSLETWGGATFDSCIRFLGEDPWERLRELKKAMPNTP MQMLLRGQNLLGYRHYADDVVEKFVERAHSNGMDVFRIFDAMNDVRNFETAVKATIDVGGHAQGTLSYTTSPVHNSDTWV DLAKRLEDLGCHSLCIKDMSGLLKPYEAEELITRIKASCDVPLALHSHATTGLSTATAVKAVEAGIDILDTAISSMSCTY GHTPTETVVAMLEGTERDTNLKLDQIEPIAAYFRDVRKKYAKWEGQLKGVDSRILIAQVPGGMLTNMEGQLKEQGAADRM DEVLEEIPRVRKELGYIPLVTPTSQIVGTQAVINVLTGERYKSITKETAGLLKGEYGQAPAEVDAELQAKVLDGAEPITC RPADLLKSEMDTLTTDLLEKAKSDGISLAEDTVDDVLTYALFPQVGLKFLKNRHNPEAFEPVPTAEAATPVAAAPQPAAG GIESYSVKVDGQVYDVEVGPQGELTSVSPSAKPAQAAQAAPAAASDAEAVPAPLAGNIFKVIVQAGAEVAEGDVLLILEA MKMETEVRAARSGIVQELNVKEGDAVTVGAPLLSLA >Mature_595_residues SMSKPLAITDVVLRDAHQSLFATRMRIEDMLPIAAELDKVGYWSLETWGGATFDSCIRFLGEDPWERLRELKKAMPNTPM QMLLRGQNLLGYRHYADDVVEKFVERAHSNGMDVFRIFDAMNDVRNFETAVKATIDVGGHAQGTLSYTTSPVHNSDTWVD LAKRLEDLGCHSLCIKDMSGLLKPYEAEELITRIKASCDVPLALHSHATTGLSTATAVKAVEAGIDILDTAISSMSCTYG HTPTETVVAMLEGTERDTNLKLDQIEPIAAYFRDVRKKYAKWEGQLKGVDSRILIAQVPGGMLTNMEGQLKEQGAADRMD EVLEEIPRVRKELGYIPLVTPTSQIVGTQAVINVLTGERYKSITKETAGLLKGEYGQAPAEVDAELQAKVLDGAEPITCR PADLLKSEMDTLTTDLLEKAKSDGISLAEDTVDDVLTYALFPQVGLKFLKNRHNPEAFEPVPTAEAATPVAAAPQPAAGG IESYSVKVDGQVYDVEVGPQGELTSVSPSAKPAQAAQAAPAAASDAEAVPAPLAGNIFKVIVQAGAEVAEGDVLLILEAM KMETEVRAARSGIVQELNVKEGDAVTVGAPLLSLA
Specific function: Lyase and sodium transporter [H]
COG id: COG5016
COG function: function code C; Pyruvate/oxaloacetate carboxyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 biotinyl-binding domain [H]
Homologues:
Organism=Homo sapiens, GI106049528, Length=625, Percent_Identity=32.96, Blast_Score=278, Evalue=7e-75, Organism=Homo sapiens, GI106049295, Length=625, Percent_Identity=32.96, Blast_Score=278, Evalue=7e-75, Organism=Homo sapiens, GI106049292, Length=625, Percent_Identity=32.96, Blast_Score=278, Evalue=7e-75, Organism=Caenorhabditis elegans, GI17562816, Length=624, Percent_Identity=33.3333333333333, Blast_Score=305, Evalue=4e-83, Organism=Saccharomyces cerevisiae, GI6319695, Length=622, Percent_Identity=32.6366559485531, Blast_Score=294, Evalue=2e-80, Organism=Saccharomyces cerevisiae, GI6321376, Length=612, Percent_Identity=31.5359477124183, Blast_Score=289, Evalue=1e-78, Organism=Drosophila melanogaster, GI24652212, Length=621, Percent_Identity=33.9774557165861, Blast_Score=308, Evalue=6e-84, Organism=Drosophila melanogaster, GI24652210, Length=621, Percent_Identity=33.9774557165861, Blast_Score=308, Evalue=6e-84, Organism=Drosophila melanogaster, GI24652214, Length=621, Percent_Identity=33.9774557165861, Blast_Score=308, Evalue=6e-84, Organism=Drosophila melanogaster, GI19921944, Length=621, Percent_Identity=33.9774557165861, Blast_Score=308, Evalue=6e-84, Organism=Drosophila melanogaster, GI24652216, Length=621, Percent_Identity=33.9774557165861, Blast_Score=308, Evalue=6e-84, Organism=Drosophila melanogaster, GI281363050, Length=621, Percent_Identity=33.9774557165861, Blast_Score=308, Evalue=6e-84, Organism=Drosophila melanogaster, GI24652224, Length=621, Percent_Identity=33.9774557165861, Blast_Score=308, Evalue=6e-84, Organism=Drosophila melanogaster, GI24652222, Length=621, Percent_Identity=33.9774557165861, Blast_Score=308, Evalue=6e-84, Organism=Drosophila melanogaster, GI24652220, Length=621, Percent_Identity=33.9774557165861, Blast_Score=308, Evalue=6e-84, Organism=Drosophila melanogaster, GI24652218, Length=621, Percent_Identity=33.9774557165861, Blast_Score=308, Evalue=6e-84,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR001882 - InterPro: IPR000089 - InterPro: IPR003379 - InterPro: IPR005776 - InterPro: IPR000891 - InterPro: IPR011053 [H]
Pfam domain/function: PF00364 Biotin_lipoyl; PF00682 HMGL-like; PF02436 PYC_OADA [H]
EC number: =4.1.1.3 [H]
Molecular weight: Translated: 64290; Mature: 64159
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: PS50991 PYR_CT ; PS50968 BIOTINYL_LIPOYL ; PS00188 BIOTIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMSKPLAITDVVLRDAHQSLFATRMRIEDMLPIAAELDKVGYWSLETWGGATFDSCIRF CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH LGEDPWERLRELKKAMPNTPMQMLLRGQNLLGYRHYADDVVEKFVERAHSNGMDVFRIFD HCCCHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH AMNDVRNFETAVKATIDVGGHAQGTLSYTTSPVHNSDTWVDLAKRLEDLGCHSLCIKDMS HHHHHHHHHHHHHHHEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH GLLKPYEAEELITRIKASCDVPLALHSHATTGLSTATAVKAVEAGIDILDTAISSMSCTY HHCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC GHTPTETVVAMLEGTERDTNLKLDQIEPIAAYFRDVRKKYAKWEGQLKGVDSRILIAQVP CCCHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC GGMLTNMEGQLKEQGAADRMDEVLEEIPRVRKELGYIPLVTPTSQIVGTQAVINVLTGER CCHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHH YKSITKETAGLLKGEYGQAPAEVDAELQAKVLDGAEPITCRPADLLKSEMDTLTTDLLEK HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH AKSDGISLAEDTVDDVLTYALFPQVGLKFLKNRHNPEAFEPVPTAEAATPVAAAPQPAAG HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GIESYSVKVDGQVYDVEVGPQGELTSVSPSAKPAQAAQAAPAAASDAEAVPAPLAGNIFK CCCCEEEEECCEEEEEEECCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHH VIVQAGAEVAEGDVLLILEAMKMETEVRAARSGIVQELNVKEGDAVTVGAPLLSLA HHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHCC >Mature Secondary Structure SMSKPLAITDVVLRDAHQSLFATRMRIEDMLPIAAELDKVGYWSLETWGGATFDSCIRF CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH LGEDPWERLRELKKAMPNTPMQMLLRGQNLLGYRHYADDVVEKFVERAHSNGMDVFRIFD HCCCHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH AMNDVRNFETAVKATIDVGGHAQGTLSYTTSPVHNSDTWVDLAKRLEDLGCHSLCIKDMS HHHHHHHHHHHHHHHEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH GLLKPYEAEELITRIKASCDVPLALHSHATTGLSTATAVKAVEAGIDILDTAISSMSCTY HHCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC GHTPTETVVAMLEGTERDTNLKLDQIEPIAAYFRDVRKKYAKWEGQLKGVDSRILIAQVP CCCHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC GGMLTNMEGQLKEQGAADRMDEVLEEIPRVRKELGYIPLVTPTSQIVGTQAVINVLTGER CCHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHH YKSITKETAGLLKGEYGQAPAEVDAELQAKVLDGAEPITCRPADLLKSEMDTLTTDLLEK HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH AKSDGISLAEDTVDDVLTYALFPQVGLKFLKNRHNPEAFEPVPTAEAATPVAAAPQPAAG HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GIESYSVKVDGQVYDVEVGPQGELTSVSPSAKPAQAAQAAPAAASDAEAVPAPLAGNIFK CCCCEEEEECCEEEEEEECCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHH VIVQAGAEVAEGDVLLILEAMKMETEVRAARSGIVQELNVKEGDAVTVGAPLLSLA HHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2454915 [H]