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The map label for this gene is yliB [C]

Identifier: 218710467

GI number: 218710467

Start: 2685900

End: 2687582

Strand: Direct

Name: yliB [C]

Synonym: VS_2506

Alternate gene names: 218710467

Gene position: 2685900-2687582 (Clockwise)

Preceding gene: 218710466

Following gene: 218710468

Centisome position: 81.41

GC content: 43.61

Gene sequence:

>1683_bases
ATGCTTGCCAATATAAAAAAAACAGCAATAGCAACAGCAATTATTGCAACTGCTACAACAGGTTTTGCATCAGTAGCAAC
CGCTGCAGAACGCAGCGAACTGACCGTTCACCCGAAAGAGTACACTACATTCGTACGTAACTTTAACCCGTACCTTGGTG
CTACTAACCTACATACTACAACTGACTTCATGTACGAGCCTTTAGTAGTATTTAACGAAATGCACGGTAACACTCCGGTG
TTCCGTCTAGCTGAAAACTTCAAAATGTCAGATGATCTGATGAGCGTTGTTTTCGACATTCGTAAGGGTGTTAAATGGTC
TGATGGAGAAACTTTCTCTGCTGATGATGTTGTTTTTTCTTTCAACCTTGTAAAAGAGAAGCCAGAGCTTGACCAATCTG
GTATCAACTCTTGGGTAACTTCTGTAGAAAAACTGAACGACAACCAAGTTAAGTTCACACTAACAGAAGCAAACTCAAAC
GTACCTTACGAGATTGCTAAAGTACCTGTAGTACCTAAGCACATCTGGAAAGACGTTAAAGATCCATCAACGTTTACCAA
TGAGAACCCGGTAGGTTCTGGTCCATTTACAGAAATCGATACGTTTACAGCGCAACTGTACATCCAGTGTGCAAACCCGA
ACTACTGGGATGCAGACAACCTAGATGTTGACTGTCTACGTGTTCCACAAATTGCGAACAACGACCAGTTCTTAGGTAAA
GTTGTAAACAGTGAAATGGACTGGACGTCTTCTTTCGTTCCAGATATCGATCGTACATACGCTGCAGCAAGCCCTAAACA
CCACTACTGGTACCCGCCAGCAGGTACACAAGCATTCATCGTTAACTTCAAGCACCCTGATGCTGCGAAGCATGAAGCAT
TGAGCAACGTTGAATTCCGTCGTGCTTTCTCTATGGCTCTTGACCGCCAAACTATCATCGACATCGCATTCTACGGTGGC
GGTACTGTGAACGATTTCGCATCGGGTCTTGGCTACGCGTTTGAAGCTTGGTCTGATGAAAAAACTCACGACAAATACAA
AGGCTTCAACACTTACAACGCTGAAGGCGCGAAGAAGCTTCTTGCTGACGCAGGCTTCAAAGATGTAAACAAAGATGGTT
TTGTTGACACTCCATCAGGCAAATCTTTCGAACTAATGATTCAATCGCCAAACGGCTGGACTGACTTCAACAACACAGTT
CAACTTGCGGTAGAGCAACTAAACGAAATCGGTATTAAAGCGAAAGCTCGTACACCTGACTTCTCTGTTTACAACCAAGC
AATGCTTGAAGGTACATACGACGTAGCATACACAAACTACTTCCACGGTGCGGATCCATACACGTACTGGAACAGTGCTT
ACAACTCATCACTACAATCTGGTGATGGTATGCCTCGTTTCGCTATGCACTTCTACAAAAATGACAAGCTAGATGGTCTT
CTAAACAGCTTCTACAAAACAGCTGACAAGAACGAACAGCTAGATATTGCACATGGTATCCAGCAAATTATCGCTGCAGA
CCAAGTGACAATCCCTGTGATGTCTGGTGCTTACATGTACCAATACAACACAACTCGATTCACTGGTTGGTGGAACGAAG
AAAATCCAAAAGGCCGTCCAAACATTTGGGCTGGTATTCCAGAGCGTCTACTTCATGTACTGGACCTAAAACCAGTTAAA
TAA

Upstream 100 bases:

>100_bases
AAGAGGTAGGCCTTTAACTAGAGTGTGTATCTACTAAATAATTAGCGACAGATAACATTCAATCCATTAGTGAAATGAAA
GCAAATAGTAAGGAACAGCT

Downstream 100 bases:

>100_bases
GTAATCGTTCAATCTTTGCGGCGTAACTTCTTACGCCGCTTATAAAAATCCCCACACTATCAATTGAAAGTATGGCGCTA
GTCGTCAGGGGATTTTTCGT

Product: peptide ABC transporter periplasmic peptide-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 560; Mature: 560

Protein sequence:

>560_residues
MLANIKKTAIATAIIATATTGFASVATAAERSELTVHPKEYTTFVRNFNPYLGATNLHTTTDFMYEPLVVFNEMHGNTPV
FRLAENFKMSDDLMSVVFDIRKGVKWSDGETFSADDVVFSFNLVKEKPELDQSGINSWVTSVEKLNDNQVKFTLTEANSN
VPYEIAKVPVVPKHIWKDVKDPSTFTNENPVGSGPFTEIDTFTAQLYIQCANPNYWDADNLDVDCLRVPQIANNDQFLGK
VVNSEMDWTSSFVPDIDRTYAAASPKHHYWYPPAGTQAFIVNFKHPDAAKHEALSNVEFRRAFSMALDRQTIIDIAFYGG
GTVNDFASGLGYAFEAWSDEKTHDKYKGFNTYNAEGAKKLLADAGFKDVNKDGFVDTPSGKSFELMIQSPNGWTDFNNTV
QLAVEQLNEIGIKAKARTPDFSVYNQAMLEGTYDVAYTNYFHGADPYTYWNSAYNSSLQSGDGMPRFAMHFYKNDKLDGL
LNSFYKTADKNEQLDIAHGIQQIIAADQVTIPVMSGAYMYQYNTTRFTGWWNEENPKGRPNIWAGIPERLLHVLDLKPVK

Sequences:

>Translated_560_residues
MLANIKKTAIATAIIATATTGFASVATAAERSELTVHPKEYTTFVRNFNPYLGATNLHTTTDFMYEPLVVFNEMHGNTPV
FRLAENFKMSDDLMSVVFDIRKGVKWSDGETFSADDVVFSFNLVKEKPELDQSGINSWVTSVEKLNDNQVKFTLTEANSN
VPYEIAKVPVVPKHIWKDVKDPSTFTNENPVGSGPFTEIDTFTAQLYIQCANPNYWDADNLDVDCLRVPQIANNDQFLGK
VVNSEMDWTSSFVPDIDRTYAAASPKHHYWYPPAGTQAFIVNFKHPDAAKHEALSNVEFRRAFSMALDRQTIIDIAFYGG
GTVNDFASGLGYAFEAWSDEKTHDKYKGFNTYNAEGAKKLLADAGFKDVNKDGFVDTPSGKSFELMIQSPNGWTDFNNTV
QLAVEQLNEIGIKAKARTPDFSVYNQAMLEGTYDVAYTNYFHGADPYTYWNSAYNSSLQSGDGMPRFAMHFYKNDKLDGL
LNSFYKTADKNEQLDIAHGIQQIIAADQVTIPVMSGAYMYQYNTTRFTGWWNEENPKGRPNIWAGIPERLLHVLDLKPVK
>Mature_560_residues
MLANIKKTAIATAIIATATTGFASVATAAERSELTVHPKEYTTFVRNFNPYLGATNLHTTTDFMYEPLVVFNEMHGNTPV
FRLAENFKMSDDLMSVVFDIRKGVKWSDGETFSADDVVFSFNLVKEKPELDQSGINSWVTSVEKLNDNQVKFTLTEANSN
VPYEIAKVPVVPKHIWKDVKDPSTFTNENPVGSGPFTEIDTFTAQLYIQCANPNYWDADNLDVDCLRVPQIANNDQFLGK
VVNSEMDWTSSFVPDIDRTYAAASPKHHYWYPPAGTQAFIVNFKHPDAAKHEALSNVEFRRAFSMALDRQTIIDIAFYGG
GTVNDFASGLGYAFEAWSDEKTHDKYKGFNTYNAEGAKKLLADAGFKDVNKDGFVDTPSGKSFELMIQSPNGWTDFNNTV
QLAVEQLNEIGIKAKARTPDFSVYNQAMLEGTYDVAYTNYFHGADPYTYWNSAYNSSLQSGDGMPRFAMHFYKNDKLDGL
LNSFYKTADKNEQLDIAHGIQQIIAADQVTIPVMSGAYMYQYNTTRFTGWWNEENPKGRPNIWAGIPERLLHVLDLKPVK

Specific function: Possible binding-protein with either a transport or enzymatic activity [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787052, Length=463, Percent_Identity=22.6781857451404, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1789966, Length=532, Percent_Identity=21.6165413533835, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 62942; Mature: 62942

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLANIKKTAIATAIIATATTGFASVATAAERSELTVHPKEYTTFVRNFNPYLGATNLHTT
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEECCHHHHHHHHCCCCCCCCCCCCCC
TDFMYEPLVVFNEMHGNTPVFRLAENFKMSDDLMSVVFDIRKGVKWSDGETFSADDVVFS
HHHHHCCHHHEECCCCCCCCEEHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE
FNLVKEKPELDQSGINSWVTSVEKLNDNQVKFTLTEANSNVPYEIAKVPVVPKHIWKDVK
EEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEECCCCHHHHHHCCC
DPSTFTNENPVGSGPFTEIDTFTAQLYIQCANPNYWDADNLDVDCLRVPQIANNDQFLGK
CCCCCCCCCCCCCCCCCHHHEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHH
VVNSEMDWTSSFVPDIDRTYAAASPKHHYWYPPAGTQAFIVNFKHPDAAKHEALSNVEFR
HHCCCCCCCCCCCCCCHHHHHCCCCCCCEECCCCCCEEEEEEECCCCHHHHHHHHCHHHH
RAFSMALDRQTIIDIAFYGGGTVNDFASGLGYAFEAWSDEKTHDKYKGFNTYNAEGAKKL
HHHHHHHCCCEEEEEEEECCCCHHHHHHHCCCEEECCCCCCCHHHHCCCCCCCCHHHHHH
LADAGFKDVNKDGFVDTPSGKSFELMIQSPNGWTDFNNTVQLAVEQLNEIGIKAKARTPD
HHHCCCCCCCCCCCEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEECCCCC
FSVYNQAMLEGTYDVAYTNYFHGADPYTYWNSAYNSSLQSGDGMPRFAMHFYKNDKLDGL
HHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHH
LNSFYKTADKNEQLDIAHGIQQIIAADQVTIPVMSGAYMYQYNTTRFTGWWNEENPKGRP
HHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEECCEEEEEECCEEEEEECCCCCCCCCC
NIWAGIPERLLHVLDLKPVK
CCCCCCHHHHHHHHCCCCCC
>Mature Secondary Structure
MLANIKKTAIATAIIATATTGFASVATAAERSELTVHPKEYTTFVRNFNPYLGATNLHTT
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEECCHHHHHHHHCCCCCCCCCCCCCC
TDFMYEPLVVFNEMHGNTPVFRLAENFKMSDDLMSVVFDIRKGVKWSDGETFSADDVVFS
HHHHHCCHHHEECCCCCCCCEEHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE
FNLVKEKPELDQSGINSWVTSVEKLNDNQVKFTLTEANSNVPYEIAKVPVVPKHIWKDVK
EEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEECCCCHHHHHHCCC
DPSTFTNENPVGSGPFTEIDTFTAQLYIQCANPNYWDADNLDVDCLRVPQIANNDQFLGK
CCCCCCCCCCCCCCCCCHHHEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHH
VVNSEMDWTSSFVPDIDRTYAAASPKHHYWYPPAGTQAFIVNFKHPDAAKHEALSNVEFR
HHCCCCCCCCCCCCCCHHHHHCCCCCCCEECCCCCCEEEEEEECCCCHHHHHHHHCHHHH
RAFSMALDRQTIIDIAFYGGGTVNDFASGLGYAFEAWSDEKTHDKYKGFNTYNAEGAKKL
HHHHHHHCCCEEEEEEEECCCCHHHHHHHCCCEEECCCCCCCHHHHCCCCCCCCHHHHHH
LADAGFKDVNKDGFVDTPSGKSFELMIQSPNGWTDFNNTVQLAVEQLNEIGIKAKARTPD
HHHCCCCCCCCCCCEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEECCCCC
FSVYNQAMLEGTYDVAYTNYFHGADPYTYWNSAYNSSLQSGDGMPRFAMHFYKNDKLDGL
HHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHH
LNSFYKTADKNEQLDIAHGIQQIIAADQVTIPVMSGAYMYQYNTTRFTGWWNEENPKGRP
HHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEECCEEEEEECCEEEEEECCCCCCCCCC
NIWAGIPERLLHVLDLKPVK
CCCCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]