Click here to switch to the map view.

The map label for this gene is rbfA

Identifier: 218710444

GI number: 218710444

Start: 2653004

End: 2653417

Strand: Reverse

Name: rbfA

Synonym: VS_2481

Alternate gene names: 218710444

Gene position: 2653417-2653004 (Counterclockwise)

Preceding gene: 218710445

Following gene: 218710443

Centisome position: 80.42

GC content: 44.44

Gene sequence:

>414_bases
ATGTCAAAAGAATTTAGCCGCACACAACGTGTGTCTCAGCAGCTTCAAAAAGAGCTTGCGCTTATCCTACAACGTGAAGT
TCGTGACTCACGTATCGGTATGGTAACTATCTCAGACGTAGAAGTGTCTCGTGACCTTGCTTACGCAAAAGTGTTCGTTA
CTTTCCTATGTATCGGTGAGCAAACACCTGAATCATGTCTTGCTGCTCTTAAAGAGCATGAAGTGCCAGTTCGTATGGCT
CTTGGTAAGCGTATTCGTCACCGTCTAACGCCTGAAGTGCGTTTTACTTACGACAACACACTAGTAGAAGGCATGCGTAT
GTCTAACTTAGTAAGTGAAGTTTTAAACGACGATAAGCGTAAGCAAGAAGAGTCTGGCCGTACTGACGAAACTCAGTCTA
AGGGCGAAGAGTAA

Upstream 100 bases:

>100_bases
CTAACATTACTAATAAAGGTAATAAGGTAATCGGTTGTTGAATACACCATGGGGGGCTGGTAATTACCAAGCCCCCCATC
TTTCTAAGTGAGAAAAGAAA

Downstream 100 bases:

>100_bases
TGGCTCGCCGTCGTAAAGGTCGCCCTATCAACGGGGTAATTCTGTTAGATAAGCCAACGGGCATTTCGTCTAATGATGCA
CTGCAAAAAGTAAAACGTAT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MSKEFSRTQRVSQQLQKELALILQREVRDSRIGMVTISDVEVSRDLAYAKVFVTFLCIGEQTPESCLAALKEHEVPVRMA
LGKRIRHRLTPEVRFTYDNTLVEGMRMSNLVSEVLNDDKRKQEESGRTDETQSKGEE

Sequences:

>Translated_137_residues
MSKEFSRTQRVSQQLQKELALILQREVRDSRIGMVTISDVEVSRDLAYAKVFVTFLCIGEQTPESCLAALKEHEVPVRMA
LGKRIRHRLTPEVRFTYDNTLVEGMRMSNLVSEVLNDDKRKQEESGRTDETQSKGEE
>Mature_136_residues
SKEFSRTQRVSQQLQKELALILQREVRDSRIGMVTISDVEVSRDLAYAKVFVTFLCIGEQTPESCLAALKEHEVPVRMAL
GKRIRHRLTPEVRFTYDNTLVEGMRMSNLVSEVLNDDKRKQEESGRTDETQSKGEE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=124, Percent_Identity=55.6451612903226, Blast_Score=135, Evalue=1e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_VIBSL (B7VJH6)

Other databases:

- EMBL:   FM954972
- RefSeq:   YP_002418065.1
- ProteinModelPortal:   B7VJH6
- SMR:   B7VJH6
- GeneID:   7162018
- GenomeReviews:   FM954972_GR
- KEGG:   vsp:VS_2481
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- ProtClustDB:   PRK00521
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 15774; Mature: 15643

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKEFSRTQRVSQQLQKELALILQREVRDSRIGMVTISDVEVSRDLAYAKVFVTFLCIGE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHCC
QTPESCLAALKEHEVPVRMALGKRIRHRLTPEVRFTYDNTLVEGMRMSNLVSEVLNDDKR
CCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCHHH
KQEESGRTDETQSKGEE
HHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SKEFSRTQRVSQQLQKELALILQREVRDSRIGMVTISDVEVSRDLAYAKVFVTFLCIGE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHCC
QTPESCLAALKEHEVPVRMALGKRIRHRLTPEVRFTYDNTLVEGMRMSNLVSEVLNDDKR
CCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCHHH
KQEESGRTDETQSKGEE
HHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA