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The map label for this gene is deoB [H]

Identifier: 218710424

GI number: 218710424

Start: 2631228

End: 2632502

Strand: Reverse

Name: deoB [H]

Synonym: VS_2461

Alternate gene names: 218710424

Gene position: 2632502-2631228 (Counterclockwise)

Preceding gene: 218710425

Following gene: 218710423

Centisome position: 79.79

GC content: 47.14

Gene sequence:

>1275_bases
GTGTATGCCGATAAACAGAGTTCTGGTGCAAAGAGCAATAAGTTGGTGAAGAAAATGAAAAGAGCATTTATTTTAGTTTT
AGATTCATTCGGTATCGGCGAAACCGCAGATGCGAACACATTCGGTGATGTAGGTTCAGACACTATGGGTCACATTGCTG
ACCATTGTGATCAAGGTCTTGCAGACAATGCGGATCGTAAAGGTCCACTAACGCTGCCAAACCTGTCTAAGCTAGGTTTA
GCTATGGCTCACAAAGAGTCTACAGGTCGCTTTGCTCCTGGTATGGACGCAGACGCTGAGATCATTGGCGCGTACGGTCA
CGCTGCTGAGCTGTCTTCTGGTAAAGACACGCCATCAGGTCACTGGGAAATCGCAGGTGTACCGGTACTGTTTGACTGGG
GCTACTTCACCGACAAAGAAAACAGTTTTCCAAAAGAACTGACTGACCGCATCCTTGAGCGTGCAGGTTTATCTGACTTC
TTAGGTAACTGTCACTCATCGGGTACAGAAATCCTAGATAACCTAGGTGAAGAGCACATGAAGAGTGGCTTGCCAATCTT
CTATACTTCAGCAGACTCTGTTTTCCAAATCGCATGTCATGAAGAGACATTCGGTCTACAGAACTTATTAGACCTTTGTC
AGATTGCTCGTGAAGAGCTAGAAGACTACAACATCGGCCGTGTTATTGCGCGCCCGTTCATTGGCCCAGGTAAAGGTCAG
TTCGAACGTACTGGTAACCGTCGTGACCTTTCTGTTGAGCCGCCAGCGGCGACAGTTCTTCAGAAGTTGGTTGATGAGAA
GGGCGGTAATGTTCACTCAATCGGTAAGATCTCTGATATCTACGCGGGTTGTGGTATTACTCAGAAAACGAAAGCAACAG
GTATCCCTGCGCTATTTGAAGCAACTAAAGAAGCGATCACTGAAGCGGGCGACAACACTATCGTGTTCACTAACTTCGTT
GATTTCGACTCAGCTTACGGTCACCGCCGTGATGTTGCAGGTTACGCAGCGGCACTTGAGTACTTCGATGGCCGTATCAA
TGAAATCATCGATATGATGAAAGAAGATGATGTACTTATCCTAACTGCTGACCACGGTTGTGATCCGACATGGCCAGGTA
CTGACCATACTCGTGAACATATCCCTGTGATTGTTTACGGAAACAAGGTTCCTGCTGGCTCTTTAGGCCGTCGCGATACC
TTCGCTGATATCGGTCAAAGCTTAGCGTCTTACTTTGGCACATCGCCAATGGGACACGGTACAAGCTTTCTATAA

Upstream 100 bases:

>100_bases
CAAAATGCAATCACTGTGGGCGGAGAATATACAGCAACGCCAGACGTTTACCGTCAGATTCGTTCTGAAGACGTGTAAAT
AACAGGTATCGGCATACCTT

Downstream 100 bases:

>100_bases
TAGTTAACGAAGAGAGAGGGAAACCTCTCTCTTCTTTTTTGTTTTGAGATTAAGGATATTTTCAATGGCTACTCCACATA
TTAATGCTGAAATGGGTGAT

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MYADKQSSGAKSNKLVKKMKRAFILVLDSFGIGETADANTFGDVGSDTMGHIADHCDQGLADNADRKGPLTLPNLSKLGL
AMAHKESTGRFAPGMDADAEIIGAYGHAAELSSGKDTPSGHWEIAGVPVLFDWGYFTDKENSFPKELTDRILERAGLSDF
LGNCHSSGTEILDNLGEEHMKSGLPIFYTSADSVFQIACHEETFGLQNLLDLCQIAREELEDYNIGRVIARPFIGPGKGQ
FERTGNRRDLSVEPPAATVLQKLVDEKGGNVHSIGKISDIYAGCGITQKTKATGIPALFEATKEAITEAGDNTIVFTNFV
DFDSAYGHRRDVAGYAAALEYFDGRINEIIDMMKEDDVLILTADHGCDPTWPGTDHTREHIPVIVYGNKVPAGSLGRRDT
FADIGQSLASYFGTSPMGHGTSFL

Sequences:

>Translated_424_residues
MYADKQSSGAKSNKLVKKMKRAFILVLDSFGIGETADANTFGDVGSDTMGHIADHCDQGLADNADRKGPLTLPNLSKLGL
AMAHKESTGRFAPGMDADAEIIGAYGHAAELSSGKDTPSGHWEIAGVPVLFDWGYFTDKENSFPKELTDRILERAGLSDF
LGNCHSSGTEILDNLGEEHMKSGLPIFYTSADSVFQIACHEETFGLQNLLDLCQIAREELEDYNIGRVIARPFIGPGKGQ
FERTGNRRDLSVEPPAATVLQKLVDEKGGNVHSIGKISDIYAGCGITQKTKATGIPALFEATKEAITEAGDNTIVFTNFV
DFDSAYGHRRDVAGYAAALEYFDGRINEIIDMMKEDDVLILTADHGCDPTWPGTDHTREHIPVIVYGNKVPAGSLGRRDT
FADIGQSLASYFGTSPMGHGTSFL
>Mature_424_residues
MYADKQSSGAKSNKLVKKMKRAFILVLDSFGIGETADANTFGDVGSDTMGHIADHCDQGLADNADRKGPLTLPNLSKLGL
AMAHKESTGRFAPGMDADAEIIGAYGHAAELSSGKDTPSGHWEIAGVPVLFDWGYFTDKENSFPKELTDRILERAGLSDF
LGNCHSSGTEILDNLGEEHMKSGLPIFYTSADSVFQIACHEETFGLQNLLDLCQIAREELEDYNIGRVIARPFIGPGKGQ
FERTGNRRDLSVEPPAATVLQKLVDEKGGNVHSIGKISDIYAGCGITQKTKATGIPALFEATKEAITEAGDNTIVFTNFV
DFDSAYGHRRDVAGYAAALEYFDGRINEIIDMMKEDDVLILTADHGCDPTWPGTDHTREHIPVIVYGNKVPAGSLGRRDT
FADIGQSLASYFGTSPMGHGTSFL

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=408, Percent_Identity=72.7941176470588, Blast_Score=615, Evalue=1e-177,
Organism=Escherichia coli, GI1789781, Length=440, Percent_Identity=28.4090909090909, Blast_Score=111, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 45808; Mature: 45808

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYADKQSSGAKSNKLVKKMKRAFILVLDSFGIGETADANTFGDVGSDTMGHIADHCDQGL
CCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
ADNADRKGPLTLPNLSKLGLAMAHKESTGRFAPGMDADAEIIGAYGHAAELSSGKDTPSG
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHEEECCCCHHHCCCCCCCCCC
HWEIAGVPVLFDWGYFTDKENSFPKELTDRILERAGLSDFLGNCHSSGTEILDNLGEEHM
CEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHH
KSGLPIFYTSADSVFQIACHEETFGLQNLLDLCQIAREELEDYNIGRVIARPFIGPGKGQ
HCCCCEEEECCCCEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCC
FERTGNRRDLSVEPPAATVLQKLVDEKGGNVHSIGKISDIYAGCGITQKTKATGIPALFE
HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEECCCCHHHHHHCCCCCCCCCCCCCHHHHH
ATKEAITEAGDNTIVFTNFVDFDSAYGHRRDVAGYAAALEYFDGRINEIIDMMKEDDVLI
HHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEE
LTADHGCDPTWPGTDHTREHIPVIVYGNKVPAGSLGRRDTFADIGQSLASYFGTSPMGHG
EEECCCCCCCCCCCCCCHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
TSFL
CCCC
>Mature Secondary Structure
MYADKQSSGAKSNKLVKKMKRAFILVLDSFGIGETADANTFGDVGSDTMGHIADHCDQGL
CCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
ADNADRKGPLTLPNLSKLGLAMAHKESTGRFAPGMDADAEIIGAYGHAAELSSGKDTPSG
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHEEECCCCHHHCCCCCCCCCC
HWEIAGVPVLFDWGYFTDKENSFPKELTDRILERAGLSDFLGNCHSSGTEILDNLGEEHM
CEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHH
KSGLPIFYTSADSVFQIACHEETFGLQNLLDLCQIAREELEDYNIGRVIARPFIGPGKGQ
HCCCCEEEECCCCEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCC
FERTGNRRDLSVEPPAATVLQKLVDEKGGNVHSIGKISDIYAGCGITQKTKATGIPALFE
HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEECCCCHHHHHHCCCCCCCCCCCCCHHHHH
ATKEAITEAGDNTIVFTNFVDFDSAYGHRRDVAGYAAALEYFDGRINEIIDMMKEDDVLI
HHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEE
LTADHGCDPTWPGTDHTREHIPVIVYGNKVPAGSLGRRDTFADIGQSLASYFGTSPMGHG
EEECCCCCCCCCCCCCCHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
TSFL
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA