| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218710340
Identifier: 218710340
GI number: 218710340
Start: 2543650
End: 2544552
Strand: Direct
Name: 218710340
Synonym: VS_2376
Alternate gene names: NA
Gene position: 2543650-2544552 (Clockwise)
Preceding gene: 218710339
Following gene: 218710346
Centisome position: 77.1
GC content: 44.63
Gene sequence:
>903_bases ATGAAAAAAACAATGACACTGCTAGCGACTTCTCTCTTTGCTCTTTATGGCTGTGGCGGCGGAGGTGGCTCTTCTTCATC AGGCTCAACGGGAGCTACTCAGTTCGACTACCCGATCAACAACTCTCAGTTTGCACCTCAAGCGACTACTGCATTGAACT ACGCATTTACCACTGATGCACAGGCTGAAGGCGACATAAAAATGAACTTCATGCCGCTAAGTGGTGAGCAGGTCATCGCT GCATTAGAGGCAGAAACCGGTAATGAAGGTCTTATCCAAGTCATCAATGATTTGATCAATTACGGTATTACAGAATTCTA TGCTTCAGAGGAAGTCATCACCAATGATGAAGGCACGCAAGAAAGCGGGACCATCTACTTTTCAGGTCCCGACCGTGGAC TACACGAAATCACCAAAACTTACTTCATTGGCAGCCAATACATCACAAGAATGATGTACAGCAGTCCACGGTTCCGTTTA AGAGGGACAGATGTAAAAGAAAACAACCCGATTATTGATATCAGTGAAGACACTGTTTCACTGCGAGTCACGCTAGATGG AAAAGCAGTCGCTGCTATGTTGAGTGACTTTGAGGATCACCAGTGGGTGAAATCACTGCCTACTAATGCTTCATGCAAAG TAACGTGGCAGCAAGAAATTAATGAAACAGGTGTACGTAAAAGCTTCACTGTTTCGGGTAAATCCATAGAAACTGCGAAC CTTACGGAGAAAAACACCTATTACATTAGCTGTGTCGGTATGGACTCGACAGAGTTTGGCACAACGTCTGAGCGCTGGTT CAACCCAAGCATCGGCCTGATTGAACAAATTGAATTGATGTCAGTGGAGCAATCCACCATTCAAGAATCAACAGCTAAAC TGACTTCAATCGAAAAAGCATAG
Upstream 100 bases:
>100_bases TCTTATGTGACTTCGTTTTTTGCCCTATTCACTCCTCAAACAATAGCATTCCTAAAAACATCGGGCCCACCAAGGGCTTC CAAATTTAGGAATGTTCAAC
Downstream 100 bases:
>100_bases TTTTATTAACTGAAGCAGACTCAATGTAAAAAGGCTTTGGGAAGCACTCCAAAGCCTTTGTAGAGGCCTAATTCTTAAGG GGAATAGAATTAGGCTTATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 300; Mature: 300
Protein sequence:
>300_residues MKKTMTLLATSLFALYGCGGGGGSSSSGSTGATQFDYPINNSQFAPQATTALNYAFTTDAQAEGDIKMNFMPLSGEQVIA ALEAETGNEGLIQVINDLINYGITEFYASEEVITNDEGTQESGTIYFSGPDRGLHEITKTYFIGSQYITRMMYSSPRFRL RGTDVKENNPIIDISEDTVSLRVTLDGKAVAAMLSDFEDHQWVKSLPTNASCKVTWQQEINETGVRKSFTVSGKSIETAN LTEKNTYYISCVGMDSTEFGTTSERWFNPSIGLIEQIELMSVEQSTIQESTAKLTSIEKA
Sequences:
>Translated_300_residues MKKTMTLLATSLFALYGCGGGGGSSSSGSTGATQFDYPINNSQFAPQATTALNYAFTTDAQAEGDIKMNFMPLSGEQVIA ALEAETGNEGLIQVINDLINYGITEFYASEEVITNDEGTQESGTIYFSGPDRGLHEITKTYFIGSQYITRMMYSSPRFRL RGTDVKENNPIIDISEDTVSLRVTLDGKAVAAMLSDFEDHQWVKSLPTNASCKVTWQQEINETGVRKSFTVSGKSIETAN LTEKNTYYISCVGMDSTEFGTTSERWFNPSIGLIEQIELMSVEQSTIQESTAKLTSIEKA >Mature_300_residues MKKTMTLLATSLFALYGCGGGGGSSSSGSTGATQFDYPINNSQFAPQATTALNYAFTTDAQAEGDIKMNFMPLSGEQVIA ALEAETGNEGLIQVINDLINYGITEFYASEEVITNDEGTQESGTIYFSGPDRGLHEITKTYFIGSQYITRMMYSSPRFRL RGTDVKENNPIIDISEDTVSLRVTLDGKAVAAMLSDFEDHQWVKSLPTNASCKVTWQQEINETGVRKSFTVSGKSIETAN LTEKNTYYISCVGMDSTEFGTTSERWFNPSIGLIEQIELMSVEQSTIQESTAKLTSIEKA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32810; Mature: 32810
Theoretical pI: Translated: 4.23; Mature: 4.23
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTMTLLATSLFALYGCGGGGGSSSSGSTGATQFDYPINNSQFAPQATTALNYAFTTDA CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHEEEEEEECCC QAEGDIKMNFMPLSGEQVIAALEAETGNEGLIQVINDLINYGITEFYASEEVITNDEGTQ CCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHCCCCEEECCCCCC ESGTIYFSGPDRGLHEITKTYFIGSQYITRMMYSSPRFRLRGTDVKENNPIIDISEDTVS CCCEEEECCCCCCHHHHHHHHEECHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCCEEE LRVTLDGKAVAAMLSDFEDHQWVKSLPTNASCKVTWQQEINETGVRKSFTVSGKSIETAN EEEEECCHHHHHHHHCCCHHHHHHHCCCCCEEEEEEHHHHCCCCCCEEEEECCCEEEECC LTEKNTYYISCVGMDSTEFGTTSERWFNPSIGLIEQIELMSVEQSTIQESTAKLTSIEKA CCCCCEEEEEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKKTMTLLATSLFALYGCGGGGGSSSSGSTGATQFDYPINNSQFAPQATTALNYAFTTDA CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHEEEEEEECCC QAEGDIKMNFMPLSGEQVIAALEAETGNEGLIQVINDLINYGITEFYASEEVITNDEGTQ CCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHCCCCEEECCCCCC ESGTIYFSGPDRGLHEITKTYFIGSQYITRMMYSSPRFRLRGTDVKENNPIIDISEDTVS CCCEEEECCCCCCHHHHHHHHEECHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCCEEE LRVTLDGKAVAAMLSDFEDHQWVKSLPTNASCKVTWQQEINETGVRKSFTVSGKSIETAN EEEEECCHHHHHHHHCCCHHHHHHHCCCCCEEEEEEHHHHCCCCCCEEEEECCCEEEECC LTEKNTYYISCVGMDSTEFGTTSERWFNPSIGLIEQIELMSVEQSTIQESTAKLTSIEKA CCCCCEEEEEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA