| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
Click here to switch to the map view.
The map label for this gene is 218710150
Identifier: 218710150
GI number: 218710150
Start: 2327939
End: 2328862
Strand: Reverse
Name: 218710150
Synonym: VS_2180
Alternate gene names: NA
Gene position: 2328862-2327939 (Counterclockwise)
Preceding gene: 218710154
Following gene: 218710149
Centisome position: 70.59
GC content: 46.75
Gene sequence:
>924_bases ATGAAACGATTTTTCTCACTAGTCGCGATCCTGTTGGTAACAGTCGCGGTGACGCCAATCGCGGAAGCGAAAAAGTTTGG TGGTGGTAAGTCATTTGGCAAAAGCTTTAAAACGGCTCCAGCACCAAAACAACAAAACACAAATTCGATCCGACAAGATC AAACTGGCAAGAAAACAGCAGCAGCTAACTCTAGCAAGAAAGGCCTTATGGGCGGTCTGCTAGGTGGTTTACTTGCTGGT GGTCTTTTAGCTGCATTCTTTGGTGGCGCATTTGAAGGTATCCAGTTCATGGATATTCTGATCATGGGTCTGATTGCTTT CCTAGCGTTTAAATTCCTACGCGGAATGTTGGGCGCGAAGCAGGGCTCAATGAATCAGCAGAATGCACGCGGCCAACAGC CAGCATTCGGCGGCATGGGTCAGAACAAGTTTGAACAACCTAAGCAACAACCAAATGTTCATAACTTCGAGCAAGCACAG CCTCAATCACAACCTCATTCGCAAAATAGCGCTGGTGGTTTCGGTTTTGGTGCACAAAGCGATGTTCCACATAACTACCC ACCAGGTTTTGATCAAGCGGCATTCATCAACGGTTCTCGTGAGCACTACCGTACACTGCAAGGTGCATGGAATCACAACG AGCTAAACACGATTGAAGAATACGTATCTCCAAGCCTATTTGAAGACCTTAAAGCTGAGCGTAACAAGCTAGACGGTGAT CAGCACACAGACGTAATGTACGTTGATGCTGAAATCGTTCGCGCAGACCACGATGGTAGTAAAGCACAGCTAAGCCTTCA GTTTAGCGGTCGCTACCGTGACACCGCAGACGGCATTGAAGAAGATATCACTGATATCTGGCACTTAGAGCGTGACCTAA CGACTCAAAATGCACCTTGGTTAATTGTTGGTATTCAAGGTTAA
Upstream 100 bases:
>100_bases ATATTATGATACATGTGTAAACGTCGTGAATATTTCATTGTTCTTTGTTAACGAGTATGATTAAGGTGTCGAAAGATAAA AAAACCTATAAAGGATAATA
Downstream 100 bases:
>100_bases TTCCACGATTTAACTAAACATCAATATGATGTAGTTATTCGGAATAACGGCAAATAATTCAAAGCCCCTGCTGAGAAATC AGCAGGGGCTTTTTTGTGTC
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Protein; Import Inner Membrane Translocase Subunit; Tim44 Domain Protein; Tim44-Like Domain-Contain Protein; Tim44-Like Domain Protein
Number of amino acids: Translated: 307; Mature: 307
Protein sequence:
>307_residues MKRFFSLVAILLVTVAVTPIAEAKKFGGGKSFGKSFKTAPAPKQQNTNSIRQDQTGKKTAAANSSKKGLMGGLLGGLLAG GLLAAFFGGAFEGIQFMDILIMGLIAFLAFKFLRGMLGAKQGSMNQQNARGQQPAFGGMGQNKFEQPKQQPNVHNFEQAQ PQSQPHSQNSAGGFGFGAQSDVPHNYPPGFDQAAFINGSREHYRTLQGAWNHNELNTIEEYVSPSLFEDLKAERNKLDGD QHTDVMYVDAEIVRADHDGSKAQLSLQFSGRYRDTADGIEEDITDIWHLERDLTTQNAPWLIVGIQG
Sequences:
>Translated_307_residues MKRFFSLVAILLVTVAVTPIAEAKKFGGGKSFGKSFKTAPAPKQQNTNSIRQDQTGKKTAAANSSKKGLMGGLLGGLLAG GLLAAFFGGAFEGIQFMDILIMGLIAFLAFKFLRGMLGAKQGSMNQQNARGQQPAFGGMGQNKFEQPKQQPNVHNFEQAQ PQSQPHSQNSAGGFGFGAQSDVPHNYPPGFDQAAFINGSREHYRTLQGAWNHNELNTIEEYVSPSLFEDLKAERNKLDGD QHTDVMYVDAEIVRADHDGSKAQLSLQFSGRYRDTADGIEEDITDIWHLERDLTTQNAPWLIVGIQG >Mature_307_residues MKRFFSLVAILLVTVAVTPIAEAKKFGGGKSFGKSFKTAPAPKQQNTNSIRQDQTGKKTAAANSSKKGLMGGLLGGLLAG GLLAAFFGGAFEGIQFMDILIMGLIAFLAFKFLRGMLGAKQGSMNQQNARGQQPAFGGMGQNKFEQPKQQPNVHNFEQAQ PQSQPHSQNSAGGFGFGAQSDVPHNYPPGFDQAAFINGSREHYRTLQGAWNHNELNTIEEYVSPSLFEDLKAERNKLDGD QHTDVMYVDAEIVRADHDGSKAQLSLQFSGRYRDTADGIEEDITDIWHLERDLTTQNAPWLIVGIQG
Specific function: Unknown
COG id: COG4395
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33450; Mature: 33450
Theoretical pI: Translated: 7.32; Mature: 7.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRFFSLVAILLVTVAVTPIAEAKKFGGGKSFGKSFKTAPAPKQQNTNSIRQDQTGKKTA CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCHHHHHCCCCCHHH AANSSKKGLMGGLLGGLLAGGLLAAFFGGAFEGIQFMDILIMGLIAFLAFKFLRGMLGAK HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC QGSMNQQNARGQQPAFGGMGQNKFEQPKQQPNVHNFEQAQPQSQPHSQNSAGGFGFGAQS CCCCCCHHCCCCCCCCCCCCCCHHHCHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC DVPHNYPPGFDQAAFINGSREHYRTLQGAWNHNELNTIEEYVSPSLFEDLKAERNKLDGD CCCCCCCCCCCCHHEECCCHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCC QHTDVMYVDAEIVRADHDGSKAQLSLQFSGRYRDTADGIEEDITDIWHLERDLTTQNAPW CCCCEEEECHHHEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCE LIVGIQG EEEEECC >Mature Secondary Structure MKRFFSLVAILLVTVAVTPIAEAKKFGGGKSFGKSFKTAPAPKQQNTNSIRQDQTGKKTA CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCHHHHHCCCCCHHH AANSSKKGLMGGLLGGLLAGGLLAAFFGGAFEGIQFMDILIMGLIAFLAFKFLRGMLGAK HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC QGSMNQQNARGQQPAFGGMGQNKFEQPKQQPNVHNFEQAQPQSQPHSQNSAGGFGFGAQS CCCCCCHHCCCCCCCCCCCCCCHHHCHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC DVPHNYPPGFDQAAFINGSREHYRTLQGAWNHNELNTIEEYVSPSLFEDLKAERNKLDGD CCCCCCCCCCCCHHEECCCHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCC QHTDVMYVDAEIVRADHDGSKAQLSLQFSGRYRDTADGIEEDITDIWHLERDLTTQNAPW CCCCEEEECHHHEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCE LIVGIQG EEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA