| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218710081
Identifier: 218710081
GI number: 218710081
Start: 2256362
End: 2256850
Strand: Direct
Name: 218710081
Synonym: VS_2102
Alternate gene names: NA
Gene position: 2256362-2256850 (Clockwise)
Preceding gene: 218710080
Following gene: 218710084
Centisome position: 68.39
GC content: 43.56
Gene sequence:
>489_bases ATGCTAAAACGATTTGCTCTCATTCTTTCACTCACATCTTCCCTAACTTTCGCTTGTGGTCTTCACCAAGATACAGGATT TAGTTTAGTGACAGAGCCCGGTTCACTAGAAGTCTTTGGCAACGTCATCACAGCCAGACAAGACGATGAATTCAACAACC TCAATAAACCGGATCATTTTCGACTCTTTGCCATCAAGGCTGCGCTTGCGAAACCCCACCCAAGCAAAATTGAGTTCAAC TTATTCGAAGCAATTAAAGGTCATTACAGCCAAGTTAAACTTGAGAAAGGTGTCGATGTGTCAGGTCGAGATACTTTGCC TACAGAGGAAGATCTATTACTGATTACGGAACTCGATGTGTTCGATGCGCTAGCTACTGGCACCATCTCTTGGGATCACG CGACACTAAACGGTTTGGTGATCATCAATGGCCCACAAGATAAACGAGAGCAACTTGAAGATTGGCTTAGTGATATTTTT GAAGGGTAG
Upstream 100 bases:
>100_bases CTTTATCGTTTATTTATTGGTACAGTTCGCAACCTTCACTCAACAATCTCGATCTATTGTTGAAGTAAGAAAACTGCCCT AGTTCGTTTAAGGTTCACAC
Downstream 100 bases:
>100_bases TTGGAATGAATTTAGTGAGAGAACAACGCCATAATCGAACCAGATACGGCTCGATTATGGGTAATTGAAGAGCAGTTAAA TTGAAAAACAGTTACGCAGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 162; Mature: 162
Protein sequence:
>162_residues MLKRFALILSLTSSLTFACGLHQDTGFSLVTEPGSLEVFGNVITARQDDEFNNLNKPDHFRLFAIKAALAKPHPSKIEFN LFEAIKGHYSQVKLEKGVDVSGRDTLPTEEDLLLITELDVFDALATGTISWDHATLNGLVIINGPQDKREQLEDWLSDIF EG
Sequences:
>Translated_162_residues MLKRFALILSLTSSLTFACGLHQDTGFSLVTEPGSLEVFGNVITARQDDEFNNLNKPDHFRLFAIKAALAKPHPSKIEFN LFEAIKGHYSQVKLEKGVDVSGRDTLPTEEDLLLITELDVFDALATGTISWDHATLNGLVIINGPQDKREQLEDWLSDIF EG >Mature_162_residues MLKRFALILSLTSSLTFACGLHQDTGFSLVTEPGSLEVFGNVITARQDDEFNNLNKPDHFRLFAIKAALAKPHPSKIEFN LFEAIKGHYSQVKLEKGVDVSGRDTLPTEEDLLLITELDVFDALATGTISWDHATLNGLVIINGPQDKREQLEDWLSDIF EG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18015; Mature: 18015
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKRFALILSLTSSLTFACGLHQDTGFSLVTEPGSLEVFGNVITARQDDEFNNLNKPDHF CCHHHHHHHHHHHHHEEEEECCCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCE RLFAIKAALAKPHPSKIEFNLFEAIKGHYSQVKLEKGVDVSGRDTLPTEEDLLLITELDV EEEEEEHHHCCCCCCCEEHHHHHHHHCCHHEEEECCCCCCCCCCCCCCCCCEEEEEECHH FDALATGTISWDHATLNGLVIINGPQDKREQLEDWLSDIFEG HHHHHHCCCEECCEEECCEEEEECCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MLKRFALILSLTSSLTFACGLHQDTGFSLVTEPGSLEVFGNVITARQDDEFNNLNKPDHF CCHHHHHHHHHHHHHEEEEECCCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCE RLFAIKAALAKPHPSKIEFNLFEAIKGHYSQVKLEKGVDVSGRDTLPTEEDLLLITELDV EEEEEEHHHCCCCCCCEEHHHHHHHHCCHHEEEECCCCCCCCCCCCCCCCCEEEEEECHH FDALATGTISWDHATLNGLVIINGPQDKREQLEDWLSDIFEG HHHHHHCCCEECCEEECCEEEEECCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA