| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218710061
Identifier: 218710061
GI number: 218710061
Start: 2234514
End: 2235680
Strand: Direct
Name: 218710061
Synonym: VS_2081
Alternate gene names: NA
Gene position: 2234514-2235680 (Clockwise)
Preceding gene: 218710060
Following gene: 218710066
Centisome position: 67.73
GC content: 46.1
Gene sequence:
>1167_bases ATGGCTGTTCATGTTGGCATTATCGATCAAGACCCCATTCGGTTGATCACCCCACTACTCGACAACCGAACGATCAGCAC TCACATCGTGTTCATCGGTGACAAAAATCAAATCAGTATCTATCAACGCTTAGACAGCGTTTTGCAGAAGCGTGATATTA CGAGTGAATTTTTCGAGATTCCAACTATCGTAAACACCTCTGCAATTAAAGAATCGATCCAAAACCTTGCTGAAGACTTA AAAGCTCGGGGACAAGAAGTGAAGCTCAACGCAAGTTGTGGCCTTCGTCACCGCCTACTGTCTGTCTACGAAGTATTTCG TACTTACCACTGGCCAATCTTTGTTGTTGAACCAAACAGTGACAAACTGTGCTGGCTTTACCCGAATGGTAAAGAAGACG CACAAGTTCAAGACCGCATCACTATCGATGACTACTTAACGGTATTCGGTGCTCGTGGTGAATTCAGCGATGTACAACTG TCTCCGCAACTTGACCAAAAACTGTATGAACTGGGTGAGCGTTGGGCAAGTAACGCATTAGAATTAGGCCCAGGTCTTGC TACATTGAACTACCTTGCAACGACCTGCCGTAAAGAACAGAGGCTTGATGTGGGCTTGTCTGAGAAGCAACAAGGTTATC GCGAGCTGAACATGCTGTTGAGCGATTTGGTTGAAGCTAAGATTGCCACTTATGACAATGGTATTTTGACGTTTGCCAAT GAAGACGCGCGACGCTTCTCAAACGGCGAATGGCTTGAAACATTGGTTCATAGCACCGTTAAGCAGATCCAAGATGACAT GCCGACCATTCAAGATCGCTCTTTGAATGTTCAGGTTTATCGTCAGCTCGGTGAGCGCGAAGTTCGTAATGAGCTTGATG TTGCTTCTGTAGTGAACAATAAGCTGCACATCATCGAGTGTAAGACCAAAGGTATGCGAGATGATGGCGATGATACCTTG TACAAGCTGGAATCGCTCAGAGACCTGCTAGGTGGCCTACAGGCCCGTGCAATGTTGGTGAGTTTCCGCCCTCTTCGTCA TAATGACATCACACGAGCAGAAGATCTTGGCCTTGCATTGATTGGCCCTGACGAATTAAAAGATCTTAAAACACATCTCG CGGCATGGTTTACCGCTGCTGGTGGTGATGAAGATTTAGAGTGCTAA
Upstream 100 bases:
>100_bases CCCTTGTTTTTTATGAGCTTTGTCATTATATGATTATAAAGGCTTGCTGCTTCCCGTTTTTCTTTCACCTTTATGAGCGA GCCGCTATTAAGGAATTTAT
Downstream 100 bases:
>100_bases TTTAAGAAACTCGAACATATCGAATTCTCAAAAAACAAAAAGGCGAATGACCGCTTAAGTCACTCGCCTTTTTTGTACCC GTAACGATTATGCCAATCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 388; Mature: 387
Protein sequence:
>388_residues MAVHVGIIDQDPIRLITPLLDNRTISTHIVFIGDKNQISIYQRLDSVLQKRDITSEFFEIPTIVNTSAIKESIQNLAEDL KARGQEVKLNASCGLRHRLLSVYEVFRTYHWPIFVVEPNSDKLCWLYPNGKEDAQVQDRITIDDYLTVFGARGEFSDVQL SPQLDQKLYELGERWASNALELGPGLATLNYLATTCRKEQRLDVGLSEKQQGYRELNMLLSDLVEAKIATYDNGILTFAN EDARRFSNGEWLETLVHSTVKQIQDDMPTIQDRSLNVQVYRQLGEREVRNELDVASVVNNKLHIIECKTKGMRDDGDDTL YKLESLRDLLGGLQARAMLVSFRPLRHNDITRAEDLGLALIGPDELKDLKTHLAAWFTAAGGDEDLEC
Sequences:
>Translated_388_residues MAVHVGIIDQDPIRLITPLLDNRTISTHIVFIGDKNQISIYQRLDSVLQKRDITSEFFEIPTIVNTSAIKESIQNLAEDL KARGQEVKLNASCGLRHRLLSVYEVFRTYHWPIFVVEPNSDKLCWLYPNGKEDAQVQDRITIDDYLTVFGARGEFSDVQL SPQLDQKLYELGERWASNALELGPGLATLNYLATTCRKEQRLDVGLSEKQQGYRELNMLLSDLVEAKIATYDNGILTFAN EDARRFSNGEWLETLVHSTVKQIQDDMPTIQDRSLNVQVYRQLGEREVRNELDVASVVNNKLHIIECKTKGMRDDGDDTL YKLESLRDLLGGLQARAMLVSFRPLRHNDITRAEDLGLALIGPDELKDLKTHLAAWFTAAGGDEDLEC >Mature_387_residues AVHVGIIDQDPIRLITPLLDNRTISTHIVFIGDKNQISIYQRLDSVLQKRDITSEFFEIPTIVNTSAIKESIQNLAEDLK ARGQEVKLNASCGLRHRLLSVYEVFRTYHWPIFVVEPNSDKLCWLYPNGKEDAQVQDRITIDDYLTVFGARGEFSDVQLS PQLDQKLYELGERWASNALELGPGLATLNYLATTCRKEQRLDVGLSEKQQGYRELNMLLSDLVEAKIATYDNGILTFANE DARRFSNGEWLETLVHSTVKQIQDDMPTIQDRSLNVQVYRQLGEREVRNELDVASVVNNKLHIIECKTKGMRDDGDDTLY KLESLRDLLGGLQARAMLVSFRPLRHNDITRAEDLGLALIGPDELKDLKTHLAAWFTAAGGDEDLEC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44062; Mature: 43930
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVHVGIIDQDPIRLITPLLDNRTISTHIVFIGDKNQISIYQRLDSVLQKRDITSEFFEI CEEEEEECCCCCHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHC PTIVNTSAIKESIQNLAEDLKARGQEVKLNASCGLRHRLLSVYEVFRTYHWPIFVVEPNS CCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCC DKLCWLYPNGKEDAQVQDRITIDDYLTVFGARGEFSDVQLSPQLDQKLYELGERWASNAL CCEEEECCCCCCCCCHHCCEEHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHCCHH ELGPGLATLNYLATTCRKEQRLDVGLSEKQQGYRELNMLLSDLVEAKIATYDNGILTFAN HHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC EDARRFSNGEWLETLVHSTVKQIQDDMPTIQDRSLNVQVYRQLGEREVRNELDVASVVNN CHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC KLHIIECKTKGMRDDGDDTLYKLESLRDLLGGLQARAMLVSFRPLRHNDITRAEDLGLAL CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCEEE IGPDELKDLKTHLAAWFTAAGGDEDLEC ECHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure AVHVGIIDQDPIRLITPLLDNRTISTHIVFIGDKNQISIYQRLDSVLQKRDITSEFFEI EEEEEECCCCCHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHC PTIVNTSAIKESIQNLAEDLKARGQEVKLNASCGLRHRLLSVYEVFRTYHWPIFVVEPNS CCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCC DKLCWLYPNGKEDAQVQDRITIDDYLTVFGARGEFSDVQLSPQLDQKLYELGERWASNAL CCEEEECCCCCCCCCHHCCEEHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHCCHH ELGPGLATLNYLATTCRKEQRLDVGLSEKQQGYRELNMLLSDLVEAKIATYDNGILTFAN HHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC EDARRFSNGEWLETLVHSTVKQIQDDMPTIQDRSLNVQVYRQLGEREVRNELDVASVVNN CHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC KLHIIECKTKGMRDDGDDTLYKLESLRDLLGGLQARAMLVSFRPLRHNDITRAEDLGLAL CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCEEE IGPDELKDLKTHLAAWFTAAGGDEDLEC ECHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA